PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G156400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 289aa    MW: 32554.5 Da    PI: 4.9301
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G156400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.91.1e-27958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         k+ien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  Manes.02G156400.1.p  9 KKIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                         68********************************************9997 PP
2K-box25.36.5e-1079153579
                K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                          ++ s+ +++ e+lq+e+a L+++++  +++ R +  + L+  s+ eL++ e++L + l+++ ++K+ ll +qi +
  Manes.02G156400.1.p  79 EHPSAINSDVEELQHEVASLQQQLQIAEEQMRLYEPDPLKISSMGELESCEKNLVDTLQSVMQRKEYLLSNQIAY 153
                          4555667889***************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.702161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-29279IPR002100Transcription factor, MADS-box
CDDcd002658.70E-37275No hitNo description
PRINTSPR004047.0E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-263859IPR002100Transcription factor, MADS-box
PfamPF014869.3E-787152IPR002487Transcription factor, K-box
PROSITE profilePS512976.54588190IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRVKLEIKK IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK  60
KRIEDVFARY VNLPDQEREH PSAINSDVEE LQHEVASLQQ QLQIAEEQMR LYEPDPLKIS  120
SMGELESCEK NLVDTLQSVM QRKEYLLSNQ IAYDPSSMQQ GMTTSFENEV IGWMPDGGQN  180
HTQIFDASAS LNNLSSNGEA HSMAECHVTN PNDHNFSTWP QPYSSTALHS NPMPAPSLYP  240
QIQHGMVGPN ITEMMPREQM EIPMSGPHSH LENEAANYDN QIPQLNGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-18190186Myocyte-specific enhancer factor 2B
1tqe_Q8e-18190186Myocyte-specific enhancer factor 2B
1tqe_R8e-18190186Myocyte-specific enhancer factor 2B
1tqe_S8e-18190186Myocyte-specific enhancer factor 2B
6c9l_A8e-18190186Myocyte-specific enhancer factor 2B
6c9l_B8e-18190186Myocyte-specific enhancer factor 2B
6c9l_C8e-18190186Myocyte-specific enhancer factor 2B
6c9l_D8e-18190186Myocyte-specific enhancer factor 2B
6c9l_E8e-18190186Myocyte-specific enhancer factor 2B
6c9l_F8e-18190186Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G156400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600590.10.0agamous-like MADS-box protein AGL104
SwissprotQ9LM461e-104AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A2C9WE930.0A0A2C9WE93_MANES; Uncharacterized protein
STRINGcassava4.1_022532m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-103AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]