PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G152500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 344aa    MW: 38251 Da    PI: 6.0766
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G152500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.96.2e-201461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++lvd+++++G g+W++ ++  g++R++k+c++rw +yl
  Manes.02G152500.1.p 14 KGPWTPEEDQKLVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding54.92e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++++eE++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
  Manes.02G152500.1.p  67 RGKFSQEEEQTILNLHSVLGNK-WSAIASHLP-GRTDNEIKNFWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-25764IPR009057Homeodomain-like
PROSITE profilePS5129418.83961IPR017930Myb domain
SuperFamilySSF466899.54E-3311108IPR009057Homeodomain-like
SMARTSM007174.5E-161363IPR001005SANT/Myb domain
PfamPF002492.3E-181461IPR001005SANT/Myb domain
CDDcd001674.99E-131661No hitNo description
PROSITE profilePS5129426.62762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-2865117IPR009057Homeodomain-like
SMARTSM007179.8E-1766114IPR001005SANT/Myb domain
PfamPF002493.3E-1667112IPR001005SANT/Myb domain
CDDcd001671.56E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGRSPGCDES GLKKGPWTPE EDQKLVDYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILN LHSVLGNKWS AIASHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHQPRT DLLASLPHLM ALLDLKDLMN HRLLDDHSMR LQAEAVQLTK LQYLQYLLQS  180
ENSIASNSYG QNGIADVEIL NLLNQIPAIK ETPFLNSSQF ENPASSYFFG LATSQPLHYS  240
NQLPQMSDPQ VLFNNQPSLN SEIGQAATLT TMVSQGDNNN NIDPSDSLWV LPSPTSSIPP  300
TLPETSMSNP GDAFSAASSS GGGTYSHWPE IFLDDDSIMH EIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G152500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605390.10.0transcription factor MYB41-like
SwissprotQ9S9Z21e-112MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A2C9WE490.0A0A2C9WE49_MANES; Uncharacterized protein
STRINGcassava4.1_033604m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.18e-89myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]