PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G145300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 268aa MW: 30118.8 Da PI: 8.6901 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.2 | 2.2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCdaeva+iifs tgkl+ey+s Manes.02G145300.1.p 9 KKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEYCS 59 68***********************************************96 PP | |||||||
2 | K-box | 44.2 | 8.3e-16 | 91 | 171 | 19 | 99 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + a L+kei + +++R+++Ge+L+ L+++eLqqLe+ Le +l+++ ++K + ++++i l kk +l eenk+L++k++ Manes.02G145300.1.p 91 SHRAHLNKEIAEKTQQLRQMMGENLQGLDIEELQQLEKLLEAGLSRVLETKGDKMMNEILMLEKKGAQLLEENKQLKEKMM 171 55678999999999999*************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.899 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.1E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.63E-31 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.22E-33 | 12 | 75 | No hit | No description |
PRINTS | PR00404 | 7.2E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.838 | 86 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.0E-15 | 94 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAEELSVLCD AEVALIIFSA TGKLFEYCSS 60 STKDVIARYN LHSNNLDKLE RPSLELELEN SHRAHLNKEI AEKTQQLRQM MGENLQGLDI 120 EELQQLEKLL EAGLSRVLET KGDKMMNEIL MLEKKGAQLL EENKQLKEKM MRILSKGKGP 180 ALLEWDGGIH QEEGMSSESA TNFCSYPTGP PLPLADDSYY TSLKLGKHGS KSNKFSLNFS 240 LKRAAIYLLL SVNCFAGCPF EDGGKTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 1e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 1e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 1e-18 | 1 | 69 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G145300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021605290.1 | 0.0 | MADS-box protein AGL24-like isoform X1 | ||||
Swissprot | Q9FUY6 | 4e-87 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A2C9WDY6 | 0.0 | A0A2C9WDY6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_013975m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF890 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 5e-81 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G145300.1.p |
Publications ? help Back to Top | |||
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