PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G133900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 511aa MW: 55770.8 Da PI: 4.9274 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.3e-18 | 33 | 80 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l Manes.02G133900.1.p 33 KGPWTAAEDAILVEYVTKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 80 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 86 | 129 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++ Manes.02G133900.1.p 86 KGAFTPEEERRIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 129 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.195 | 28 | 80 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-31 | 31 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 32 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-16 | 33 | 80 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-25 | 34 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.21E-11 | 35 | 80 | No hit | No description |
PROSITE profile | PS51294 | 26.398 | 81 | 135 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-16 | 85 | 133 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 86 | 129 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-26 | 88 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.62E-12 | 88 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MSKMTNGGED NKRSKNRRDS PSVEEASNGP LKKGPWTAAE DAILVEYVTK HGEGNWNAVQ 60 KHSGLSRCGK SCRLRWANHL RPDLKKGAFT PEEERRIIEL HAKMGNKWAR MAAELPGRTD 120 NEIKNYWNTR IKRLQRAGLP VYPPEVCQQV LNGSQESQNM GTLQNTDACG PDLIQSDHFE 180 IPEVEFKNLE LNRGLIYSPT VLDIPTSSML KSGVCSSHGS SFMLPTMHPH KRLRESQTIF 240 PSLDGGVGSG LSAFNQSTDY FSEKITESFD ISSQYDSHTN TFGQPPLCVL PGSHALLNDN 300 SSSSEPLCGA MKLELPSLQY PETQQDSWGT PNSPLPSLES VDTLILSPPA EQTQSDCLSP 360 RSSGLLEAVL YESQTLKNSK KCSGHQTSDT SVATGDVEDC PFNTYNTEWE VHHDPNSPLG 420 HSAASVFSAC TPISGSSSDE PGFELKPETT NQVSTPYIEG KEAPKQIDFT RPDVLLGSGW 480 FGLGSGFVNN QSVRTDEVGA CLGDDIDSEC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-31 | 31 | 133 | 5 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G133900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021598621.1 | 0.0 | transcription factor GAMYB-like | ||||
Refseq | XP_021598631.1 | 0.0 | transcription factor GAMYB-like | ||||
TrEMBL | A0A251LHX7 | 0.0 | A0A251LHX7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_005846m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 2e-98 | myb domain protein 65 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G133900.1.p |