PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G131100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 600aa    MW: 68053.7 Da    PI: 7.6492
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G131100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.92e-1002255972374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lL++cAeavs +d++ a++lL r++ +++p gd  qRla++f++AL+ar+ +  se ++al++++ +    +  l a kl++ ++P+l
  Manes.02G131100.1.p 225 STLLIHCAEAVSGNDHKTATELLMRIRRHSTPCGDGSQRLAHCFANALEARIISRESEAVAALATTKVP---ATCMLDAWKLLFSACPFL 311
                          579***************************************************888888888777777...8999999*********** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          ++s+  a ++I+e +++++r+Hii f++ +G+ W +L+q La+Rp+gpp lR+T ++ pe+   s+ +leetg+ L++f+e+l+vpfe++
  Manes.02G131100.1.p 312 NISNSFAFHTIMEVADKADRLHIIHFGVVYGFPWSSLIQHLAKRPGGPPVLRVTRMEIPEPCfdSASKLEETGSYLKSFCERLNVPFEYT 401
                          **********************************************************999899************************** PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          + v++r+ ++++e+++++++E+++V + ++  +ll+e+v+++   +rd+vL+l+++++P v++    +  +n++ F +rf eal y+s+l
  Manes.02G131100.1.p 402 A-VSRRWPSIRFEDFKIDRDEVTIVACLYRSRNLLEETVDVDIncQRDAVLNLIRRMNPSVFIQGIVNGGYNASFFTTRFREALFYFSSL 490
                          *.7***********************************99988889******************************************** PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                          fd+l+a+++++  er+++E+e+ g++i nv+aceg+er er et+++W+ r ++aG+k++pl++++++++k  ++  + + + ++e+ ++
  Manes.02G131100.1.p 491 FDMLDANVSHNVPERMVLEQEIYGKRILNVIACEGSERLERPETYKQWHLRNMRAGLKQLPLNQRIMQNMKEQVKLQYHKDFLMDEDGHW 580
                          ******************************************************************************888********* PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          +v+gWk+r L+++S+W+
  Manes.02G131100.1.p 581 IVQGWKGRILFALSCWK 597
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.247198577IPR005202Transcription factor GRAS
PfamPF035146.9E-98225597IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MNPVLQKLSN DAILKYINHA LMEEELEEQS CCILQHSALQ AAEKCLHDIL GPKCLPPKNI  60
YHAFSYENRD LGNHVSTYCT TANDIAAVNS RLLIRDVHEQ ESSCTITTSP LGLEPSSSPS  120
FLAAASISGT KKLQSISGWE VETGEFPRNG KQMILDFANN RVTPVAAAKT SNGRRDIDHE  180
YDFFNPYEDF QNAPTRWILN RKGKSRGSNG ETTRGIKTRK FVDLSTLLIH CAEAVSGNDH  240
KTATELLMRI RRHSTPCGDG SQRLAHCFAN ALEARIISRE SEAVAALATT KVPATCMLDA  300
WKLLFSACPF LNISNSFAFH TIMEVADKAD RLHIIHFGVV YGFPWSSLIQ HLAKRPGGPP  360
VLRVTRMEIP EPCFDSASKL EETGSYLKSF CERLNVPFEY TAVSRRWPSI RFEDFKIDRD  420
EVTIVACLYR SRNLLEETVD VDINCQRDAV LNLIRRMNPS VFIQGIVNGG YNASFFTTRF  480
REALFYFSSL FDMLDANVSH NVPERMVLEQ EIYGKRILNV IACEGSERLE RPETYKQWHL  540
RNMRAGLKQL PLNQRIMQNM KEQVKLQYHK DFLMDEDGHW IVQGWKGRIL FALSCWKSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-4323059625378Protein SCARECROW
5b3h_A8e-4323059624377Protein SCARECROW
5b3h_D8e-4323059624377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G131100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603791.10.0scarecrow-like protein 14
SwissprotO809331e-135SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A2C9WEY70.0A0A2C9WEY7_MANES; Uncharacterized protein
STRINGcassava4.1_033153m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-137GRAS family protein