PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G131000.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

GRAS

Protein Properties

Length: 668aa MW: 75666.1 Da PI: 6.2812

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G131000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	379.4	4.4e-116	295	663	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 + L+ cA+av +gd++ a + L++++ +asp g+ +qR+a+yf++AL+arla+ +++l+++l + +++ + ++ l+a++l++ ++P+ Manes.02G131000.1.p 295 TRLIYCAQAVGTGDQRTAYEQLKQIRLHASPFGNGNQRMAHYFANALEARLAG-TEKLFQTLISGPST--SAADILKAYQLYVSICPFRM 381 6799**********************************************9.99999999877777..599************* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 ++++ +N++I + +++++r+HiiDf+is+G+QWp+L+ +++Rp+gpp++RiTg++ p++g +e++e tg+rL+++A++l+vpfe+n+ Manes.02G131000.1.p 382 MTNFFTNRTIGKVADKANRLHIIDFGISYGFQWPCLIYRFSTRPGGPPKIRITGIDYPQPGfrPAERVEGTGRRLKRLADRLNVPFEYNA 471 ********************************************************9************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 +a+++e++++e+L+++++E++aV+++++l++l+d++ l+s+rd+vLk++k+++P+++v+ + ++n++ F rf eal +ysalfd+ Manes.02G131000.1.p 472 -IAQKWETIRYEDLNIDRDEVVAVCCMYRLKNLPDDTIMLDSPRDAVLKTIKRINPDIFVHGVVNGSYNAPFFTSRFREALFHYSALFDM 560 .7************************************************************************************ PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360 lea++ re++er + Erel+g++++nv+aceg er+er et+++W++r ++ GFk++pl ++ +k ++ + + ++++ + ++e+ +++++ Manes.02G131000.1.p 561 LEANVTREDQERLVFERELIGKDVMNVIACEGVERFERPETYKQWQMRNSRIGFKQLPLHQDLMKRVRNIKSDYHKN-FVIDEDGHWMLM 649 ***********************************************************************66.******** PP GRAS 361 gWkdrpLvsvSaWr 374 gWk+r + ++SaW+ Manes.02G131000.1.p 650 GWKGRIIHAISAWK 663 ***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.389	267	644	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-113	295	663	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MNPLSISADL QPSGAHILST ELNTNNDSPY NSETGDFSHA VLKFINDVLM EEESEDKPCM 60 LQDCLALHAA EKSLYEVIGE KYPPSSDQFP SPIHRNAESP DENFTPTSSG DSSNIAIEFN 120 WISDESSALQ PSPMYSDEII FSPLDLCGDM SSSGKVNGVM GNFNKSSPNN CSLILAPTNL 180 EKDLAEKNTE NDGRRSYASN PSRGRKNHPP GDNGCIEEGR SKKHSTFVAG ESEQLEIFDN 240 SFLHKIGNNE AIPCPLYDAS RNEESKKLQQ NEQSQASNSR MRRQAHDRET MDLSTRLIYC 300 AQAVGTGDQR TAYEQLKQIR LHASPFGNGN QRMAHYFANA LEARLAGTEK LFQTLISGPS 360 TSAADILKAY QLYVSICPFR MMTNFFTNRT IGKVADKANR LHIIDFGISY GFQWPCLIYR 420 FSTRPGGPPK IRITGIDYPQ PGFRPAERVE GTGRRLKRLA DRLNVPFEYN AIAQKWETIR 480 YEDLNIDRDE VVAVCCMYRL KNLPDDTIML DSPRDAVLKT IKRINPDIFV HGVVNGSYNA 540 PFFTSRFREA LFHYSALFDM LEANVTREDQ ERLVFERELI GKDVMNVIAC EGVERFERPE 600 TYKQWQMRNS RIGFKQLPLH QDLMKRVRNI KSDYHKNFVI DEDGHWMLMG WKGRIIHAIS 660 AWKAVQD*

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MNPLSISADL QPSGAHILST ELNTNNDSPY NSETGDFSHA VLKFINDVLM EEESEDKPCM  60
LQDCLALHAA EKSLYEVIGE KYPPSSDQFP SPIHRNAESP DENFTPTSSG DSSNIAIEFN  120
WISDESSALQ PSPMYSDEII FSPLDLCGDM SSSGKVNGVM GNFNKSSPNN CSLILAPTNL  180
EKDLAEKNTE NDGRRSYASN PSRGRKNHPP GDNGCIEEGR SKKHSTFVAG ESEQLEIFDN  240
SFLHKIGNNE AIPCPLYDAS RNEESKKLQQ NEQSQASNSR MRRQAHDRET MDLSTRLIYC  300
AQAVGTGDQR TAYEQLKQIR LHASPFGNGN QRMAHYFANA LEARLAGTEK LFQTLISGPS  360
TSAADILKAY QLYVSICPFR MMTNFFTNRT IGKVADKANR LHIIDFGISY GFQWPCLIYR  420
FSTRPGGPPK IRITGIDYPQ PGFRPAERVE GTGRRLKRLA DRLNVPFEYN AIAQKWETIR  480
YEDLNIDRDE VVAVCCMYRL KNLPDDTIML DSPRDAVLKT IKRINPDIFV HGVVNGSYNA  540
PFFTSRFREA LFHYSALFDM LEANVTREDQ ERLVFERELI GKDVMNVIAC EGVERFERPE  600
TYKQWQMRNS RIGFKQLPLH QDLMKRVRNI KSDYHKNFVI DEDGHWMLMG WKGRIIHAIS  660
AWKAVQD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-52	281	662	7	378	Protein SCARECROW
5b3h_A	3e-52	281	662	6	377	Protein SCARECROW
5b3h_D	3e-52	281	662	6	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G131000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021653822.1	0.0	scarecrow-like protein 14
TrEMBL	A0A2C9WEZ0	0.0	A0A2C9WEZ0_MANES; Uncharacterized protein
STRING	cassava4.1_033845m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Manes.02G131000.1.p