PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G129800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family G2-like
Protein Properties Length: 334aa    MW: 36443.3 Da    PI: 5.484
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G129800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.12.4e-29159212155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          +prl+Wtp+LH+rFv++v+ L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Manes.02G129800.1.p 159 RPRLVWTPQLHKRFVDVVAYL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 212
                          59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.727156215IPR017930Myb domain
SuperFamilySSF466891.24E-19156216IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-30157217IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-22160212IPR006447Myb domain, plants
PfamPF002495.2E-7162211IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGEEVKMGEY ETNGEDTHGD VERVAEWEIG LPTADDLTPL SQVLIPPELA SAFSISPEPQ  60
RTFIDVNLAS QNTISNLRGP GAGGQLNALS SNNFKSYNED RAPDLMLVDP EQEPEDNNMD  120
RDGSGSESRK LRRIDSEEAD SALRTENSGE DPSTRTPKRP RLVWTPQLHK RFVDVVAYLG  180
IKNAVPKTIM QLMNVEGLTR ENVASHLQKY RLYLKRMQGL SSEGPSSSDQ LFASTPVPQS  240
LHESGSGAGS GGNGAAHANG HLGMPIPVPY HQGAGSMMPM PVYGHMGNHH HHHGFDGNLP  300
YNMLQQRDWS GNNYGSVVSY PHHPPHVAPN DNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-33159215157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:21236673, ECO:0000269|PubMed:21753751, ECO:0000269|PubMed:22311777}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G129800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:17132630, ECO:0000269|PubMed:21753751}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603437.10.0transcription factor LUX-like
RefseqXP_021603439.10.0transcription factor LUX-like
RefseqXP_021603440.10.0transcription factor LUX-like
SwissprotQ9SNB47e-88PCL1_ARATH; Transcription factor LUX
TrEMBLA0A2C9WDE20.0A0A2C9WDE2_MANES; Uncharacterized protein
STRINGcassava4.1_034123m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69573347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.37e-83G2-like family protein
Publications ? help Back to Top
  1. Higham CF,Husmeier D
    A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana.
    BMC Bioinformatics, 2013. 14 Suppl 10: p. S3
    [PMID:24267177]