PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G122200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 306aa    MW: 34596.9 Da    PI: 9.8284
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G122200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.6e-082873346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         +WT+ E +++ +a + + ++   +W+++a++++ g+t  +++  ++ 
  Manes.02G122200.1.p 28 KWTPAENKIFENALAVYDKDtpdRWHRVAAMLP-GKTVGDVIKQYRE 73
                         8********************************.******9999986 PP
2Myb_DNA-binding48.22.5e-15134178347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Manes.02G122200.1.p 134 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 178
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-42373IPR009057Homeodomain-like
PROSITE profilePS512938.5712479IPR017884SANT domain
SMARTSM007177.3E-92577IPR001005SANT/Myb domain
SuperFamilySSF466891.71E-102779IPR009057Homeodomain-like
CDDcd001671.99E-72874No hitNo description
PfamPF002491.6E-62873IPR001005SANT/Myb domain
PROSITE profilePS5129420.955127183IPR017930Myb domain
SuperFamilySSF466895.46E-17129182IPR009057Homeodomain-like
TIGRFAMsTIGR015578.7E-18130182IPR006447Myb domain, plants
SMARTSM007172.7E-13131181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-13131178IPR009057Homeodomain-like
PfamPF002495.4E-13134178IPR001005SANT/Myb domain
CDDcd001673.17E-11134179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MKWEMEVLSP ASYHSSTNWL IEESKSAKWT PAENKIFENA LAVYDKDTPD RWHRVAAMLP  60
GKTVGDVIKQ YRELEVDVSN IEAGLIPIPG YRTSPFTLDW SSSNSYDGFK QSYAGGKRPS  120
FGRTADQERK KGVPWTEEEH KLFLMGLKKY GKGDWRNISR NFVVTRTPTQ VASHAQKYFI  180
RQLSGGKDKR RASIHDITTV NLNDMRTHSP DCKRPPSPDQ STVLSQQSNA VAMPRTHFQW  240
NEHNTGATMA FNATHGNVFM PSPYGINPYG LKMQAHNLHR GAVRESCFGP QIAFQMQSAQ  300
HYPYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-1729941176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G122200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604674.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-138DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2C9WEQ50.0A0A2C9WEQ5_MANES; Uncharacterized protein
STRINGcassava4.1_012542m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-110MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]