PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G120800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 481aa    MW: 53673.9 Da    PI: 5.9773
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G120800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-17134180148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
  Manes.02G120800.1.p 134 KGQWTEEEDRKLIKLVKQFGVRKWAQIAEKLA-GRAGKQCRERWHNHL 180
                          799*****************************.*************97 PP
2Myb_DNA-binding54.62.5e-17186228145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +W++eE+ +lv+a+ + G++ W+ Ia+ ++ gRt++ +k++w+
  Manes.02G120800.1.p 186 KESWSEEEERILVEAHSKVGNR-WAEIAKLIP-GRTENAIKNHWN 228
                          578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.882129184IPR017930Myb domain
SuperFamilySSF466897.55E-31131227IPR009057Homeodomain-like
SMARTSM007172.2E-17133182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-28135188IPR009057Homeodomain-like
PfamPF139211.4E-19137194No hitNo description
CDDcd001672.41E-16137180No hitNo description
SMARTSM007174.3E-17185233IPR001005SANT/Myb domain
PROSITE profilePS5129421.564185235IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-21189233IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEGGGGGGAG GFGLRNLPNN PSIYLPFPPL TAVDRFLWGR GQFSQQQNQS NIKNNETLVS  60
TNGLYDLSAS NGAIAGFPWP CFQERDFVEG DSLINWTCEI NPRACLEGEV NVSGRICKGQ  120
AKKAKKIPCP SLIKGQWTEE EDRKLIKLVK QFGVRKWAQI AEKLAGRAGK QCRERWHNHL  180
RPDIKKESWS EEEERILVEA HSKVGNRWAE IAKLIPGRTE NAIKNHWNAT KRRQNSRRKN  240
KHTENKIAKP QSSILQDYIK SKNLKNPCPT SIGTPSHSTN TNINTPSSSS TSDDPSSQFN  300
YFLPELSEPN VDDSPPLITQ TYDDELLLQN FFNDNFMESS PEKPATKNPM EMETSSNVDN  360
QLKNPSLVLD SLGLYQNNGD QQLADTSDQY DLFSSTLMSP IMCPSGLQAE ERPTSYLYSD  420
LYLSYLLNGA TAISPSIDYG DNNSMNMELG IDQTRSNGKK EMDLIEMISS SHFFQGSNST  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-4812523449158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-4812523449158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G120800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603776.10.0transcription factor MYB119-like
TrEMBLA0A2C9WD840.0A0A2C9WD84_MANES; Uncharacterized protein
STRINGcassava4.1_033194m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-70myb domain protein 119