PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G114200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | WOX | ||||||||
Protein Properties | Length: 258aa MW: 29154.3 Da PI: 5.86 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.8 | 1.4e-21 | 106 | 166 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Manes.02G114200.1.p 106 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 166 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 102.1 | 3.9e-33 | 105 | 168 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Manes.02G114200.1.p 105 ARQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 168 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-18 | 100 | 171 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.175 | 102 | 167 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.2E-15 | 104 | 171 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-19 | 105 | 168 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.99E-14 | 106 | 168 | No hit | No description |
Pfam | PF00046 | 2.1E-19 | 106 | 166 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MMEWENNQEN QQQHQENQNQ RENRNGNNMS NVNGNNGNGG MLYVKVMTDE QLETLRKQIA 60 VYATICEQLV EMHKTLSAQQ DLAGGRLGNL YCDPLMASGG HKITARQRWT PTPVQLQILE 120 RIFDQGNGTP SKQKIKEITS ELSQHGQISE TNVYNWFQNR RARSKRKQLV ASSNNAESEV 180 ETEVDSLNEK KTKPEIFHSQ QNPPRADDLC FQSPEISSEL HFLGVLPNHR DDHLTGKLAV 240 PGGYNLYDQA EDYGMAG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 167 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00617 | PBM | Transfer from AT4G35550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G114200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021605528.1 | 0.0 | WUSCHEL-related homeobox 13 isoform X1 | ||||
Swissprot | O81788 | 1e-110 | WOX13_ARATH; WUSCHEL-related homeobox 13 | ||||
TrEMBL | A0A2C9WCZ0 | 0.0 | A0A2C9WCZ0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_014347m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-110 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G114200.1.p |
Publications ? help Back to Top | |||
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