PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G113900.3.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Nin-like

Protein Properties

Length: 294aa MW: 34306.8 Da PI: 10.4692

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G113900.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.5	9.9e-27	164	213	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i ledl kyF+lpi++A+++L+v+lTvLKr+CR++GI+RWPhRkiksl Manes.02G113900.3.p 164 ARIALEDLVKYFDLPIAEASRNLKVGLTVLKRKCREFGIPRWPHRKIKSL 213 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.85	148	233	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-21	166	213	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDFSQDYSLT ALRIFQNTIN REFIRSLHVY RLKDGTDKEV EREFLFSDDG PYVEMVANPL 60 LRLDRFRVLE LFEGQVIGVW HCIFAFNAHH SPHLSRIPSL LSISRNPKLK SVPTLANDLQ 120 LIFKLISRTA DEEPLQFLSE EKCRMIKASV MAKKKKRAAT EDIARIALED LVKYFDLPIA 180 EASRNLKVGL TVLKRKCREF GIPRWPHRKI KSLDSLIRNL QEEAERQKQE NEDAAMAVAK 240 RQKMLEREKE SIERKPFMEI QSETKRFRQD VFKRRHRARA LKTQGLRVSQ ASA*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G113900.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021603606.1	0.0	protein RKD5 isoform X2
Swissprot	O81791	7e-90	RKD5_ARATH; Protein RKD5
TrEMBL	A0A251LWD7	0.0	A0A251LWD7_MANES; Uncharacterized protein
STRING	cassava4.1_024901m	1e-161	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	5e-82	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Manes.02G113900.3.p

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]