PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G113900.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Nin-like

Protein Properties

Length: 333aa MW: 38606.6 Da PI: 10.1818

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G113900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.2	1.2e-26	203	252	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i ledl kyF+lpi++A+++L+v+lTvLKr+CR++GI+RWPhRkiksl Manes.02G113900.2.p 203 ARIALEDLVKYFDLPIAEASRNLKVGLTVLKRKCREFGIPRWPHRKIKSL 252 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.85	187	272	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-21	205	252	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MDFSQDYSLT ALRIFQNTIN REFIRSLHVY RLKDGTDKEV EREFLFSDDG PYVEMVANPL 60 LRLDRFRVLE LFEGQVIGVW HCIFAFNAHH SPHLSRIPSL LSISRNPKLK SVPTLANDLQ 120 LIFKLISRTA DEEPLQFLSE EKCRMIKGCF QSKRNLPVLD QDLNCLPYSV ATSQVPKSQQ 180 IEPSEPASVM AKKKKRAATE DIARIALEDL VKYFDLPIAE ASRNLKVGLT VLKRKCREFG 240 IPRWPHRKIK SLDSLIRNLQ EEAERQKQEN EDAAMAVAKR QKMLEREKES IERKPFMEIQ 300 SETKRFRQDV FKRRHRARAL KTQGLRVSQA SA*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G113900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021603605.1	0.0	protein RKD5 isoform X1
Swissprot	O81791	1e-102	RKD5_ARATH; Protein RKD5
TrEMBL	A0A251LH93	0.0	A0A251LH93_MANES; Uncharacterized protein
STRING	cassava4.1_024901m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-94	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Manes.02G113900.2.p

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]