PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G100100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

SRS

Protein Properties

Length: 333aa MW: 35513.3 Da PI: 6.9096

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G100100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	218.2	1.8e-67	110	254	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssa 94 ++sCqdCGnqakkdC h+RCRtCC+srg+dC thvkstWvpa+krrerqqql+a+++++ + +++kr e+ +s+l++ +l+++ Manes.02G100100.1.p 110 GVSCQDCGNQAKKDCIHMRCRTCCRSRGLDCPTHVKSTWVPASKRRERQQQLNALQQQQL---RGENPKRLSEN--PCSSSLACIRLPNS 194 579************************************************9977664...45555555544..678999**** PP DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s le ++P+evss+avfrcvrvs+++++++++aYqtav+igGh+fkGiLyd+G+e+ Manes.02G100100.1.p 195 ASDAGLELGNFPAEVSSPAVFRCVRVSGMEKDDDQYAYQTAVNIGGHLFKGILYDHGPES 254 ********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.3E-63	110	253	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.4E-27	112	154	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.0E-26	205	252	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MAGLFSLGGG SGGGGGGGRG SNQDDQHDHP PTEIPQESWY WYKNEDIPYK GFELWQQQEF 60 LYQRHQNPQQ HLYSSAAGLG VGPSRSSINV SDESSSRSAF MMMRSSSGVG VSCQDCGNQA 120 KKDCIHMRCR TCCRSRGLDC PTHVKSTWVP ASKRRERQQQ LNALQQQQLR GENPKRLSEN 180 PCSSSLACIR LPNSASDAGL ELGNFPAEVS SPAVFRCVRV SGMEKDDDQY AYQTAVNIGG 240 HLFKGILYDH GPESTYMPAT ETSSADASGG VQQLNLITAA TASAVISPTG GGGGITSASS 300 SAAAAFIDPS SLYPTPLNTY IAGTPFFPNP RS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G100100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021602481.1	0.0	protein SHI RELATED SEQUENCE 1 isoform X1
Swissprot	Q9SD40	1e-99	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A2C9WCY1	0.0	A0A2C9WCY1_MANES; Uncharacterized protein
STRING	cassava4.1_034312m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	3e-80	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Manes.02G100100.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]