PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G097700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 384aa    MW: 42843.6 Da    PI: 7.9212
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G097700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.5e-052833201254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++++++++L++l+ +      +K + a++L++A+ YI+ L
  Manes.02G097700.1.p 283 RKEKLRERIATLQRLVAPY-----GKTDTASVLTEAIGYIQFL 320
                          5678999*********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.249271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0054277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-11283335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-5283325No hitNo description
Gene3DG3DSA:4.10.280.106.2E-8283328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEPSNNLHPQ HKLQEQYGAS YSSFLFQPEH KASSTNAIFL ESWQPNRDSM YPAGFMSFYE  60
AAAPYCFSQQ SADELLRAEI KQDFPDSFPK LSEIMNSPCN GHVHESHSVS AKYKQQQYSH  120
HHDHLGENHR LRNFFSSRQP IKQLHLSAGV DQLHSNNNND PQNFSSTLER SSSSASSGYN  180
FSHILPSINI SNSDLDLNLQ AVDLLTLKYD ASAASSSQQA SQNATLGNFI GELFKESPAS  240
SSNKGSAFED AIQRKKRQKS CVQSKKEQQP PARYSCPPLK VIRKEKLRER IATLQRLVAP  300
YGKTDTASVL TEAIGYIQFL HDQVQTLSVP YMRSSYSNTT RSMQLNSSEE DGKGQPKRDL  360
LDRGLCLVPL SCASFFISYG GGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G097700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604019.10.0transcription factor bHLH110-like
TrEMBLA0A2C9WE000.0A0A2C9WE00_MANES; Uncharacterized protein
STRINGcassava4.1_031499m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-37bHLH family protein