PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G085500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 248aa MW: 28453.1 Da PI: 9.8364 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.3 | 1.6e-31 | 28 | 77 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Manes.02G085500.1.p 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 77 79***********************************************8 PP | |||||||
2 | K-box | 110.9 | 1.3e-36 | 96 | 192 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 s+ s++ea+++ +qqe++kL+++i+++q+ +Rh+lGe L++L++keL++Le +Lek++++iRskKne+l+++ie++qk+e elq++n++ Manes.02G085500.1.p 96 SNPASASEANTQFYQQESSKLRRQIREIQNLNRHILGEALSTLTFKELKNLEGRLEKGISRIRSKKNEMLFAEIEYMQKREIELQNDNMY 185 3444599*********************************************************************************** PP K-box 94 Lrkklee 100 Lr+k++e Manes.02G085500.1.p 186 LRAKIAE 192 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.375 | 20 | 80 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-41 | 20 | 79 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-33 | 21 | 93 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.02E-45 | 21 | 97 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 22 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-33 | 22 | 42 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-27 | 29 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-33 | 42 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-33 | 57 | 78 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.3E-26 | 103 | 190 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.128 | 106 | 196 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0090376 | Biological Process | seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
IATTEFPNQE PDQGPSLRKT GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA 60 EVALIVFSSR GRLYEYANNS VRATIDRYKK ASADSSNPAS ASEANTQFYQ QESSKLRRQI 120 REIQNLNRHI LGEALSTLTF KELKNLEGRL EKGISRIRSK KNEMLFAEIE YMQKREIELQ 180 NDNMYLRAKI AENERAQQQQ QQTSLMPGGS VYESVPSQAY DRNFIPVNLL EPNHHYSRPD 240 HTALQLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-20 | 21 | 92 | 2 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-20 | 21 | 92 | 2 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-20 | 21 | 92 | 2 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-20 | 21 | 92 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-20 | 21 | 92 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-20 | 21 | 92 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-20 | 21 | 92 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-20 | 21 | 92 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-20 | 21 | 92 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-20 | 21 | 92 | 2 | 73 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G085500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021598603.1 | 0.0 | agamous-like MADS-box protein AGL1 | ||||
Swissprot | Q93XH4 | 1e-136 | MADS1_VITVI; Agamous-like MADS-box protein MADS1 | ||||
TrEMBL | A0A2C9WC27 | 0.0 | A0A2C9WC27_MANES; Uncharacterized protein (Fragment) | ||||
STRING | cassava4.1_022897m | 1e-162 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF684 | 29 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 1e-117 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G085500.1.p |
Publications ? help Back to Top | |||
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