PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G085100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 303aa    MW: 33736.6 Da    PI: 7.4145
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G085100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.51.3e-33171228259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+
  Manes.02G085100.1.p 171 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSFQDPSMVITTYEGKHNHQ 228
                          8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-35155230IPR003657WRKY domain
SuperFamilySSF1182901.7E-29163230IPR003657WRKY domain
PROSITE profilePS5081132.742165230IPR003657WRKY domain
SMARTSM007741.4E-39170229IPR003657WRKY domain
PfamPF031061.8E-26171228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSSEEKNPFQ YNPFNYNEQR GIPAGSVFPF LNDGPSPVQT IQGSDPLYMS FTESLSMDYN  60
TLSRAFCMPA ICSSSEVISP IQAYFSREIG APAGADENTS TPDSSSISSP SNDAATQQGA  120
AGKSKEKQQP KEYEDAKENS NNKVSKKKKK EKKEREARFA FLTKSEIDHL EDGYRWRKYG  180
QKAVKNSPYP RSYYRCTSQK CTVKKRVERS FQDPSMVITT YEGKHNHQCP ATLRANYAAA  240
AILSPNSLLA STSSMTSISH QSFPQELLLP PYDINNQCEP SADMLYPSQQ QLHLLPADDF  300
VP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-271632311078Probable WRKY transcription factor 4
2lex_A1e-271632311078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G085100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604175.10.0probable WRKY transcription factor 71
TrEMBLA0A2C9WC330.0A0A2C9WC33_MANES; Uncharacterized protein
STRINGcassava4.1_015949m1e-137(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.13e-51WRKY DNA-binding protein 71