PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G075100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 329aa MW: 36637.5 Da PI: 6.6755 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.9 | 1e-09 | 239 | 282 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq Manes.02G075100.1.p 239 IAAKNRRERISERLKVLQELVPNG-----SKVDLVTMLEKAISYVKFLQ 282 5679*******************5.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.85E-14 | 230 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-12 | 231 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.377 | 232 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.36E-11 | 238 | 286 | No hit | No description |
SMART | SM00353 | 8.5E-12 | 238 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.5E-7 | 240 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MALAKYRMGS VQTCAYNENV TVDLYGFDDE NQKKMVLEEG ESSNCFDKTN NGLTIKNLAV 60 RHSSSSLGSP SSANSNELIF HSTSHQTEEA HSLINFRSGY DHFVHANGSL LSFQQNNPQA 120 TSHQDDYTTW EGNFNYNYHR NQMNPKCNTD PRLLEEINCF QTASNFNSMA NTETENHGDW 180 LYSEGTIATD VVQESGTQDV NFHKRPNLGE SMQALKKPCN GATRKPKPKS SPSKDPQSIA 240 AKNRRERISE RLKVLQELVP NGSKVDLVTM LEKAISYVKF LQLQVKVLAT DEFWPAQGGK 300 APDISQVKEA IDAILSSQKD RNSSSSSK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G075100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021597126.1 | 0.0 | putative transcription factor bHLH086 | ||||
Swissprot | Q9FJ00 | 1e-70 | BH086_ARATH; Putative transcription factor bHLH086 | ||||
TrEMBL | A0A2C9WBV6 | 0.0 | A0A2C9WBV6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_031371m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4937 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37800.1 | 6e-62 | RHD SIX-LIKE 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G075100.1.p |
Publications ? help Back to Top | |||
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