PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G072100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 315aa    MW: 35059.5 Da    PI: 8.6338
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G072100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH49.47.4e-16240265126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +ktelC+ +++tGtC+yGd C+FaHg
  Manes.02G072100.1.p 240 WKTELCNKWQETGTCPYGDHCQFAHG 265
                          8************************8 PP
2zf-CCCH18.14.9e-06278303126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykt  Cr  +++  C+yG rC+F H+
  Manes.02G072100.1.p 278 YKTQVCRMVLAGEACPYGHRCHFRHS 303
                          99*********66**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.2E-19234272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-11236271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.108239267IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-9239266IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-13240265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-13273306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-9273308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619277305IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5277304IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEKSVSPPSD SKAIFPPCKS PPIASSPPSD HLGTRQFASN FTTLYHSILP PKPSPLPSLS  60
FSLTSSTSSP SSAATIDDFD TENRLHQARL ILEYQELCDH YDLSLARLQL LTKDIDSLRQ  120
ENTNLRYANN ELVKLLSLSS KAAIQSRFSS REMVEPNRFD GNTERVSLPK SISVRSSGYL  180
KMNRAAASNG GQSSTSARQR VPSHFDQFVS GSLHQRVCVP GGVKRENAAV ELDVYNQGMW  240
KTELCNKWQE TGTCPYGDHC QFAHGITELR PVIRHPRYKT QVCRMVLAGE ACPYGHRCHF  300
RHSLSEQERL MGPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-21240306470Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G072100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603737.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ9C9N31e-79C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2C9WBQ50.0A0A2C9WBQ5_MANES; Uncharacterized protein
STRINGcassava4.1_032507m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-78C3H family protein