PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G066400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family TCP
Protein Properties Length: 384aa    MW: 42814.8 Da    PI: 10.3932
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G066400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP151.74.8e-47862252133
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec....eaesssssas 83 
                          ++kkdrhski+T++g+RdRRvRls+e+a++fFdLqd+LG+dk+skt+eWLl ++k+aike +++    s ss s c    e    + + +
  Manes.02G066400.1.p  86 PVKKDRHSKIYTAQGLRDRRVRLSIEIARKFFDLQDMLGYDKASKTLEWLLSKSKKAIKEVAQNggakSLSSTSTCevasE----NGELD 171
                          68**************************************************************76653344455533321....22222 PP

                  TCP  84 ...nsssg......kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                             +   +      + ++++++++ +++ +   + +akesrakarararertr km+++
  Manes.02G066400.1.p 172 givS---KseslagRVCNEKKTKRLQKAAS--SNLVAKESRAKARARARERTRVKMCTR 225
                          2222...03334335555554444444444..478888*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.8E-4487224IPR005333Transcription factor, TCP
PROSITE profilePS5136935.84488146IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.514204221IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MFPSTNSISP FPHLSSSYDL SPYIIHHEAN DLLLHHHHRP LTTPSLPATD TLLHTSASMI  60
SNKHDINVGF AGNQLDPLVL LTGKKPVKKD RHSKIYTAQG LRDRRVRLSI EIARKFFDLQ  120
DMLGYDKASK TLEWLLSKSK KAIKEVAQNG GAKSLSSTST CEVASENGEL DGIVSKSESL  180
AGRVCNEKKT KRLQKAASSN LVAKESRAKA RARARERTRV KMCTRRFHEF HNPDSTSFNR  240
NLSRSTLSQQ HQACEKSHNS LKVVALAHHD QVEQPNSHAN LVPKGNIIEE SIVIKRKLKP  300
STVMGYQQNL VMLKDVTCNN SNFPNLPQNW EINSAIARSS FCAITNVNKS TGEDCISMAR  360
SGRLKTVVNV YANMAYKHER CKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1593146154Putative transcription factor PCF6
5zkt_B6e-1593146154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G066400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605387.10.0transcription factor CYCLOIDEA-like isoform X2
TrEMBLA0A2C9WD150.0A0A2C9WD15_MANES; Uncharacterized protein
STRINGcassava4.1_022722m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.27e-31TCP family protein