PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G061900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bZIP

Protein Properties

Length: 189aa MW: 21753.2 Da PI: 6.3503

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G061900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.7	3.3e-15	82	136	5	59
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 +++rr+++NRe+ArrsR RK++ ++eL v L +eN++L+++l++ ++ +++ Manes.02G061900.1.p 82 RKQRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENHQLINKLNHVTECHDQV 136 689*******************************************999876665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-16	78	142	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.657	80	143	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.7E-12	82	154	No hit	No description
SuperFamily	SSF57959	2.44E-13	82	132	No hit	No description
Pfam	PF00170	2.6E-13	82	140	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.85E-19	83	134	No hit	No description
PROSITE pattern	PS00036	0	85	100	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MQPSEVTGLH YIVPSNTSPY SAYFGMTQSN SPTIQFNRSF NNPQTFQISP QFQEFSLQSS 60 CLSNNSTSDE ADEQQLSLIN ERKQRRMISN RESARRSRMR KQKHLDELWS QVVRLRTENH 120 QLINKLNHVT ECHDQVLQEN AQLKEEASEL RQLLCDMQLN SPYAALRDLE DVPCNTAYLR 180 ADSSNLLS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	101	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G061900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021603731.1	1e-137	basic leucine zipper 43-like
Swissprot	Q9FMC2	2e-44	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A2C9WBB5	1e-136	A0A2C9WBB5_MANES; Uncharacterized protein
STRING	cassava4.1_021296m	1e-137	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1604	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	9e-55	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	Manes.02G061900.1.p

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]