PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G059100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 105aa MW: 12240.2 Da PI: 10.3565 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 102.5 | 1.6e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss Manes.02G059100.1.p 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.1E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.529 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-31 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.24E-38 | 2 | 61 | No hit | No description |
PRINTS | PR00404 | 1.4E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFSSI 60 SKYESFLSFS LCLSFYTRTH ARVYEVLPCR WNPYNTSFNE AKRT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 92 | 1 | 93 | MEF2C |
5f28_B | 1e-20 | 1 | 92 | 1 | 93 | MEF2C |
5f28_C | 1e-20 | 1 | 92 | 1 | 93 | MEF2C |
5f28_D | 1e-20 | 1 | 92 | 1 | 93 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts redundantly with EJ2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G059100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006653 | 8e-66 | AP006653.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT05M24, TM0338, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002525916.2 | 7e-35 | developmental protein SEPALLATA 1 | ||||
Refseq | XP_003549578.1 | 8e-35 | MADS-box protein EJ2 | ||||
Refseq | XP_012088064.1 | 8e-35 | developmental protein SEPALLATA 1 | ||||
Refseq | XP_021603660.1 | 9e-35 | developmental protein SEPALLATA 1-like | ||||
Refseq | XP_021658036.1 | 8e-35 | developmental protein SEPALLATA 1-like | ||||
Refseq | XP_021690779.1 | 8e-35 | developmental protein SEPALLATA 1-like | ||||
Refseq | XP_022850778.1 | 3e-35 | MADS-box protein EJ2-like | ||||
Refseq | XP_028208595.1 | 7e-35 | MADS-box protein EJ2-like | ||||
Swissprot | K4DEK0 | 4e-34 | J2_SOLLC; MADS-box protein J2 | ||||
TrEMBL | A0A2C9WDL3 | 4e-70 | A0A2C9WDL3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_025214m | 4e-36 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.3 | 4e-36 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G059100.1.p |
Publications ? help Back to Top | |||
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