PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G055900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | TCP | ||||||||
Protein Properties | Length: 362aa MW: 39880.8 Da PI: 9.455 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 102.9 | 5.5e-32 | 49 | 179 | 2 | 124 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasns 85 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ ++ ++s+++ as+s Manes.02G055900.1.p 49 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPMPPVNFGlnqqaiPTSSHEVGASQS 138 689*************************************************************66666444211112112222222222 PP TCP 86 ssg......................kaaksaakskksqksaasalnlakesr.....akararare 124 +++ + + ak+++ ar+ Manes.02G055900.1.p 139 NKEgfktnniinwkdpdeltrpnfwS-------------------------SdvllkAKSKEVARD 179 22222233333333333333333320.........................023333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.469 | 51 | 109 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.2E-29 | 51 | 187 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MMITTSKEVD SPRKKEGDAS DGKITKASSS STPWLRLKDP RIVRVSRAFG GKDRHSKVCT 60 IRGLRDRRVR LSVPTAIQLY DLQDRLGLNQ PSKVVDWLLN AAKHEIDELP PLPMPPVNFG 120 LNQQAIPTSS HEVGASQSNK EGFKTNNIIN WKDPDELTRP NFWSSDVLLK AKSKEVARDS 180 IHEKENWIKR NDQEDGKESN EGPSSAHQIL SSSFFPKTSH SFLPGLTNNA TPYGSLFQSE 240 PPNFPLSHLG SRGFAAQTDD LHTLNAVPLP STLSLSSGSQ ILVCPPGTSQ PCFPSRVAAA 300 SAEIDPRQMN HFQMLNSSTQ NLFPNSLTPS PYLVNQSARP FHLSVTPRLF HSHTSGSHQP 360 E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-18 | 56 | 110 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-18 | 56 | 110 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G055900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021605684.1 | 0.0 | transcription factor TCP13-like | ||||
Refseq | XP_021605685.1 | 0.0 | transcription factor TCP13-like | ||||
TrEMBL | A0A2C9WCQ6 | 0.0 | A0A2C9WCQ6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010816m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 3e-49 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G055900.1.p |