PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G047300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 368aa MW: 40770.6 Da PI: 7.8705 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 7.8e-17 | 79 | 124 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia++++ gR++k+c++rw++ Manes.02G047300.1.p 79 RGHWKPAEDAKLKELVALYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 124 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 7e-17 | 131 | 174 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + ++++eE+e+l a++ +G++ W++Iar ++ gRt++ +k++w+ Manes.02G047300.1.p 131 KSAFSEEEEEKLMTAHRVYGNK-WALIARLFP-GRTDNAVKNHWHV 174 5789******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.772 | 74 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-14 | 78 | 127 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.74E-28 | 79 | 172 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-16 | 79 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-26 | 80 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.79E-13 | 82 | 123 | No hit | No description |
PROSITE profile | PS51294 | 26.009 | 126 | 180 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 130 | 178 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 131 | 173 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.37E-12 | 133 | 173 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-21 | 133 | 179 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
METFTHMAPY NICSCHTLNV HKGDHYMAFL SSPMPKCCTF SFGSNQNNDV EDKCNAGISL 60 ISDQESLMHH QQSSKLCARG HWKPAEDAKL KELVALYGPQ NWNLIAEKLQ GRSGKSCRLR 120 WFNQLDPRIN KSAFSEEEEE KLMTAHRVYG NKWALIARLF PGRTDNAVKN HWHVIMARKY 180 REQSFAYRRR KQTEAAKRRV EDGSSSATRE TAINVTETKS PYLCNAIITK PSLHFPLEGC 240 KGFCDVTSSE EAATSGTVLF VGSSNLLSLP HGSCPEQTPF DFFSGHKSYE ISSQNGTTFT 300 VSHNMQQSSN HHLSAGFSDS MASPTSRVSN CEPSSSSSIS SSDNNATCHF QTTISPPFID 360 FLGVGAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-35 | 79 | 179 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G047300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021605698.1 | 0.0 | transcription factor MYB105-like | ||||
TrEMBL | A0A2C9WDH8 | 0.0 | A0A2C9WDH8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028014m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-73 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G047300.1.p |