PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G046300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ZF-HD
Protein Properties Length: 324aa    MW: 35573.2 Da    PI: 8.2094
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G046300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer108.53.7e-3469125459
          ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                          ++YkeClkNhAaslGgha+DGCgEfmps++++ ++++++kCaACgCHRnFHRre+e+
  Manes.02G046300.1.p  69 ITYKECLKNHAASLGGHALDGCGEFMPSPTANhNDPTSIKCAACGCHRNFHRREPED 125
                          79****************************99999*******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2267122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.0E-2869123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.7E-3170122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.1271122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.58E-19193267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-29201267IPR009057Homeodomain-like
TIGRFAMsTIGR015651.8E-23206263IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDIAPTTTST TTNNNTITNT ATAKSPDQET ETPTRIQSAK PLSFTNGVLK RHNSQQHHHH  60
HLAAPPVVIT YKECLKNHAA SLGGHALDGC GEFMPSPTAN HNDPTSIKCA ACGCHRNFHR  120
REPEDSPPPT NTTTTIEYQP HHRHHPPPPP PQAIPQPYRS PNSASPPPIS SSYPSAPHML  180
LALSGGVSAG LNDNSTIHVP GSSSARKRFR TKFSQSQKER MYQFSEKVGW KIQKRDEDLI  240
QEFCNEVGVD KGVLKVWMHN NKNTFGKRDA NGNGVRSNDL ENAHHTPTDT PTTATTNNND  300
SSENVNHHNL FENDNVAHKA YLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-202072641875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G046300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596263.10.0zinc-finger homeodomain protein 10-like, partial
SwissprotQ9LXG02e-81ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2C9WCE10.0A0A2C9WCE1_MANES; Uncharacterized protein
STRINGcassava4.1_011661m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-72homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]