PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G045500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Trihelix

Protein Properties

Length: 481aa MW: 53492.5 Da PI: 8.7715

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G045500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.1	3.2e-20	16	104	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+ aLiea+r+++ +++rg+l++++W++v++ + + +s+ qC++k+e+l+kry+++k+++ ++ + s++ +f l+ Manes.02G045500.1.p 16 CWTQEETIALIEAYRDKWYSVNRGNLRAADWDSVAASVadsSTADPPKSSLQCRHKIEKLRKRYRAEKQRSLNHPGRFFSSWDLFPLLD 104 8***********************************5444444589**********************99888889999998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-19	15	106	No hit	No description
PROSITE profile	PS50090	6.307	17	76	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MSTTTDSIPR RVPPPCWTQE ETIALIEAYR DKWYSVNRGN LRAADWDSVA ASVADSSTAD 60 PPKSSLQCRH KIEKLRKRYR AEKQRSLNHP GRFFSSWDLF PLLDSMAIGS AGPKPCQDID 120 EENDIGDGFQ VKTLGNRYLV TSNKSANIDQ DFDADFDSGL DSDLALRARK CGRIGEDSNS 180 NVSRALGNGF SLKPVSDINS VSVAFRPKDY GRVDVKLKSD IDFHCDYEAG VCMQVEKTQC 240 RSFQPQGSRS KGYGKIVGDS SPINRNIGEG ADTYIGFPVK TLGDVPSGFK PKNYRNIDRK 300 STPNFGNDVH YTSDKVNKFG ENVINGWVSP PPGFRPKKNC KIDGSLKLDV DSKLLNVFGN 360 VKQGDIEVGG KKVMDPIAEV VSAIKMSTKS FLKVEKRKME MAMEIEKMRM DMLLKHNQMI 420 LESQQQIVDA FAKTFLEKKE KKRRLSPYQN KNGDSQVAAT DCESIGRSGI LKEECEGAFT 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MSTTTDSIPR RVPPPCWTQE ETIALIEAYR DKWYSVNRGN LRAADWDSVA ASVADSSTAD  60
PPKSSLQCRH KIEKLRKRYR AEKQRSLNHP GRFFSSWDLF PLLDSMAIGS AGPKPCQDID  120
EENDIGDGFQ VKTLGNRYLV TSNKSANIDQ DFDADFDSGL DSDLALRARK CGRIGEDSNS  180
NVSRALGNGF SLKPVSDINS VSVAFRPKDY GRVDVKLKSD IDFHCDYEAG VCMQVEKTQC  240
RSFQPQGSRS KGYGKIVGDS SPINRNIGEG ADTYIGFPVK TLGDVPSGFK PKNYRNIDRK  300
STPNFGNDVH YTSDKVNKFG ENVINGWVSP PPGFRPKKNC KIDGSLKLDV DSKLLNVFGN  360
VKQGDIEVGG KKVMDPIAEV VSAIKMSTKS FLKVEKRKME MAMEIEKMRM DMLLKHNQMI  420
LESQQQIVDA FAKTFLEKKE KKRRLSPYQN KNGDSQVAAT DCESIGRSGI LKEECEGAFT  480
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	437	444	KKEKKRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G045500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021605142.1	0.0	uncharacterized protein LOC110609684
TrEMBL	A0A2C9WCE6	0.0	A0A2C9WCE6_MANES; Uncharacterized protein
STRING	cassava4.1_023451m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13797	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-26	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Manes.02G045500.1.p