PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G041500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 231aa    MW: 26017.4 Da    PI: 5.0539
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G041500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-1860110155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a++ ++g
  Manes.02G041500.1.p  60 PSYRGVRMRH-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALTIKG 110
                          57*****999.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.71E-3460120No hitNo description
PfamPF008474.1E-1360110IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2161118IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.9E-3361119IPR001471AP2/ERF domain
PROSITE profilePS5103223.47261118IPR001471AP2/ERF domain
SMARTSM003807.7E-4061124IPR001471AP2/ERF domain
PRINTSPR003672.3E-106273IPR001471AP2/ERF domain
PRINTSPR003672.3E-1084100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
METSLAMEYE AHNDIEPSSS SSSSSTDSSS FSKRHQELKN DDDERNKKLK ISTENAGRHP  60
SYRGVRMRHW GKWVSEIREP RKKSRIWLGT YPTAEMAARA HDVAALTIKG RSAHLNFPEL  120
SHELPRPASA SPKDIQAAAA LAAALNYKNK DHDQAEMESS QDSTTEASHQ DTQESLSSTS  180
KDHEDDAFID LPDLLLDISH QIDEFYCLSS WQVCETESGL WHEQPSLWEY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-17591181272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G041500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603649.11e-170ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ72e-57ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2C9WAN91e-168A0A2C9WAN9_MANES; Uncharacterized protein
STRINGcassava4.1_026245m1e-169(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.19e-55ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]