PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G039900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 325aa MW: 36293.7 Da PI: 6.7779

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G039900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+++F + L H++ H Manes.02G039900.1.p 4 HKCKLCTRTFANGRALGGHMKAH 26 79******************998 PP
2	zf-C2H2	12.1	0.00061	262	284	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F + L H r+H Manes.02G039900.1.p 262 FECPYCFKVFGSGQALGGHKRSH 284 89**************9999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.8E-6	3	27	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.056	4	26	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.45	4	31	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	223	243	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	0.0017	224	243	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.15	262	284	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.3E-11	262	285	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.681	262	284	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	264	284	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MERHKCKLCT RTFANGRALG GHMKAHLATL PLPPKTTITT QQQQLGERTE SASSSYSSPG 60 EEQEQEIKNR EVEEKALVYG LRENPKKSFR FADPEFSFAV DAGSVVQDRE SETESRNPTR 120 RRSKRTRKSG FAENQKQNFD VKKLKLKNLS SVESPTEPEP VSSVSDTSPE EDVAMCLMML 180 SRDVWMRNNE EEDQEQGKDG ERSIGMMLEE AEEIKVSKIR GKLRCEKCMK LFRSSQALGA 240 HKRICSLNGT ELRNNEGNQR IFECPYCFKV FGSGQALGGH KRSHLIGTST PSAVENSAKL 300 DNNLIDLNLP APAEDDDFSV VSDA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	144	RRRSKRTRKSGFAENQKQNFDVKKLK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G039900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021605179.1	0.0	zinc finger protein ZAT4-like
TrEMBL	A0A2C9WDA0	0.0	A0A2C9WDA0_MANES; Uncharacterized protein
STRING	cassava4.1_011850m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF767	34	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	3e-32	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Manes.02G039900.1.p