PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G030100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24986.9 Da PI: 9.5339 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.9 | 8.7e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss Manes.02G030100.1.p 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 73.5 | 6.2e-25 | 83 | 171 | 9 | 97 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +e+ ++ ++++ L k+ie L+ ++R+llG++Le++ + eLqqLe+qLe+sl++iR++Kn+l++e+ie+l++ ek+l een++Lr k Manes.02G030100.1.p 83 IQENMQNMMKEDPLSLAKKIELLEVSKRRLLGDGLEPCCIDELQQLENQLERSLTRIRTRKNQLFREHIEKLKEEEKDLMEENTRLRIK 171 56777778899999************************************************************************977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.539 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.17E-42 | 3 | 71 | No hit | No description |
PRINTS | PR00404 | 4.8E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-32 | 3 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.0E-24 | 84 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.905 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSC 60 SINKTIERYQ KKAKDLGISI KAIQENMQNM MKEDPLSLAK KIELLEVSKR RLLGDGLEPC 120 CIDELQQLEN QLERSLTRIR TRKNQLFREH IEKLKEEEKD LMEENTRLRI KCGLQPMDLS 180 TTPERQQTAD RDRESVEVET ALFIGLPETR NTQKA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 3e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 3e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 3e-18 | 1 | 69 | 1 | 69 | MEF2C |
6byy_A | 3e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 3e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 3e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 3e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 3e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 3e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 3e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 3e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G030100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021597155.1 | 1e-155 | agamous-like MADS-box protein AGL19 | ||||
Swissprot | O82743 | 4e-80 | AGL19_ARATH; Agamous-like MADS-box protein AGL19 | ||||
TrEMBL | A0A2C9WBZ0 | 1e-153 | A0A2C9WBZ0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_026051m | 1e-109 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF666 | 30 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 6e-75 | AGAMOUS-like 19 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G030100.1.p |
Publications ? help Back to Top | |||
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