PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G027000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 667aa    MW: 74182.8 Da    PI: 6.2151
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G027000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.32.5e-1302856501373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          lv+lL++c+e + s++++l++++La+l +lasp+g+++ Rl ay+teALa r+ar ++++++ ++p+e + +  +++ +al+l+++vsPi
  Manes.02G027000.1.p 285 LVSLLTACVESIGSKNMALINHCLAKLGDLASPKGTAFSRLSAYYTEALALRVARLWPHIFHLITPREFD-RVDDDSGTALRLLNQVSPI 373
                          6899*****************************************************************8.5678888999********* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          +kf h+taN+ +l+a+eg+++vHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+l++pfef++
  Manes.02G027000.1.p 374 PKFIHFTANEILLRAFEGKDKVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLAGFAEALNLPFEFHP 459
                          ***********************************************************....*************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           v++rled++l++L+vk+gE++a+n+++q+h++l +    +   +++L l++s++P +v ++eqea+hn+++F +r++++l+yysa+fds
  Manes.02G027000.1.p 460 -VVDRLEDVRLWMLHVKEGECVAINCIFQMHKTLYDGNGGA--LRDLLGLFRSTNPSIVLMAEQEAEHNAPNFEARVCNSLKYYSAIFDS 546
                          .7********************************6554444..588******************************************** PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve..eesgsl 358
                          ++++lp +s  rik+E++ ++rei+n+vaceg++r erhe++ekW + +e+ GF+ + ++e+++ q ++ll++++ + yrv+  ++++++
  Manes.02G027000.1.p 547 IDSSLPLDSLIRIKIEEM-FAREIRNIVACEGSDRLERHESFEKWIKLMEQGGFRCMGINEREVLQSQMLLKMYSCEDYRVKewQDRAAI 635
                          ******************.********************************************************888****55556777 PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          +l W d+pL+++SaW
  Manes.02G027000.1.p 636 TLSWLDQPLYTISAW 650
                          7************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.427259629IPR005202Transcription factor GRAS
PfamPF035148.8E-128285650IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE SPAQLQACHF QLPSMSTQRL DLPCTFSRKE SSRSQPIRPV  60
GVGLSVDKSL ESKTSSCSLK QNIRLPPLAT STQSVKDEFW EKGKSLKRFA EQGSLDESCT  120
NRAKRKRGSN DNGKSSGVHE VGDTLTLGQL GSGNFWFQSG FEVPRGLKPP QAPFSLTCSG  180
DEERVHIVSG EVISPPFPLS RNPWLDSVIT EITDLGEKDG ESSQRPAKET SGSSASSESH  240
VLGLRLSENV AEHEVGNGSR NPHPQEGTTI ESSEENHQEY RAFELVSLLT ACVESIGSKN  300
MALINHCLAK LGDLASPKGT AFSRLSAYYT EALALRVARL WPHIFHLITP REFDRVDDDS  360
GTALRLLNQV SPIPKFIHFT ANEILLRAFE GKDKVHIIDF DIKQGLQWPS LFQSLASRTN  420
PPSHVRITGI GESKQELNET GDRLAGFAEA LNLPFEFHPV VDRLEDVRLW MLHVKEGECV  480
AINCIFQMHK TLYDGNGGAL RDLLGLFRST NPSIVLMAEQ EAEHNAPNFE ARVCNSLKYY  540
SAIFDSIDSS LPLDSLIRIK IEEMFAREIR NIVACEGSDR LERHESFEKW IKLMEQGGFR  600
CMGINEREVL QSQMLLKMYS CEDYRVKEWQ DRAAITLSWL DQPLYTISAW APLDVAGSSS  660
SFSQPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-7029265226380Protein SCARECROW
5b3h_A5e-7029265225379Protein SCARECROW
5b3h_D5e-7029265225379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G027000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603464.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2C9WCW30.0A0A2C9WCW3_MANES; Uncharacterized protein
STRINGcassava4.1_003118m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein