PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G005000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Dof | ||||||||
Protein Properties | Length: 263aa MW: 28552.9 Da PI: 8.9859 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.3 | 9.6e-40 | 39 | 99 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s Manes.02G005000.2.p 39 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSA 99 7899******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-28 | 28 | 91 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-33 | 41 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.134 | 43 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 45 | 81 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MDTAQWPQEI MVKPIEEIVT NTCPKPAAAA LERKARPQKE QALNCPRCNS TNTKFCYYNN 60 YSLTQPRYFC KTCRRYWTEG GSLRNIPVGG GSRKNKRSAS ATSSSSSSSS SKKLPDLVTP 120 SRLSQSSTQN PKIHQGQDLN LAFPSTPALE LLTGISSRGL NSFMPMPVQD PNSVYTSGFS 180 LQDFKPTLNF SLDGLGSGYG NLQGVQEAGG RLLFPFEDLK QVSSTSDIEQ NREPGDSAGY 240 WTGMLGGGGG SWFEASFRLA SF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G005000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021605365.1 | 0.0 | dof zinc finger protein DOF4.6-like isoform X3 | ||||
Swissprot | Q8LAP8 | 1e-66 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A2C9W9M7 | 0.0 | A0A2C9W9M7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_012842m | 1e-173 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 9e-56 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G005000.2.p |
Publications ? help Back to Top | |||
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