PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G269300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 375aa    MW: 42418.6 Da    PI: 5.0761
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G269300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042426123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C ksFs+   L  H+r+H
  Manes.01G269300.1.p  4 HRCKLCFKSFSNGRALGGHMRSH 26
                         79********************9 PP
2zf-C2H213.10.00028245267123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+k+F++   L  H  +H
  Manes.01G269300.1.p 245 YRCETCKKVFKSYQALGGHRASH 267
                          9************9999998887 PP
3zf-C2H213.40.00023298320123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++Fs+   L  H rtH
  Manes.01G269300.1.p 298 HECPYCFRVFSSGQALGGHKRTH 320
                          79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.87E-5332No hitNo description
PfamPF139121.2E-6327IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.575431IPR007087Zinc finger, C2H2
SMARTSM003550.044426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM003550.026245267IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.63E-8245320No hitNo description
PROSITE profilePS5015710.076245272IPR007087Zinc finger, C2H2
PfamPF139126.7E-11245269IPR007087Zinc finger, C2H2
PROSITE patternPS000280247267IPR007087Zinc finger, C2H2
PfamPF139127.3E-11297320IPR007087Zinc finger, C2H2
SMARTSM003550.13298320IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.515298320IPR007087Zinc finger, C2H2
PROSITE patternPS000280300320IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MERHRCKLCF KSFSNGRALG GHMRSHMLNL PITTKPEEEE EEEEEEEEEE EEEDTPIQLG  60
EDTESASSSS SSSSSEEEAE AEGEDKGLSY GLRENPKRSI RLVDPEFSFA VDAASVVLQD  120
RESETESSKN PTRRRSKRNR KLLEHQYHHH QQRQEQENNI KKLNFNKFSK ADSWAEAEPV  180
SSISDTTTEE DVAFCLMMLS RDKWKRVVQQ NQREQDEEAE TEKSIEETDE SEEFKSCKAR  240
TKGKYRCETC KKVFKSYQAL GGHRASHKKL KLYTPAKELN LGPQNAGTST SAAEKKVHEC  300
PYCFRVFSSG QALGGHKRTH VTGVAATPAR SSSKIEDNLN LIDLNLPAPV DDDDLSQIEL  360
SAVSDAEFVN HIKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G269300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021620585.10.0zinc finger protein ZAT9-like
TrEMBLA0A2C9WPI60.0A0A2C9WPI6_MANES; Uncharacterized protein
STRINGcassava4.1_010237m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-54C2H2-like zinc finger protein