PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G265400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 21835.9 Da PI: 7.7701 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.5 | 5.5e-39 | 16 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC k+C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq+ + Manes.01G265400.1.p 16 PCGACKFLRRKCLKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRFDAVVTLCYEALARVRDPVYGCVGHLFTLQQQVVN 105 7***********************9989************************************************************** PP DUF260 90 lkaelallkee 100 l+aela+++++ Manes.01G265400.1.p 106 LQAELAYIQAR 116 ******99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.017 | 15 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-37 | 16 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MEREREMSSA NNGGGPCGAC KFLRRKCLKG CIFAPYFDSD QGTAHFAAVH KVFGASNASK 60 LLLRIPAHKR FDAVVTLCYE ALARVRDPVY GCVGHLFTLQ QQVVNLQAEL AYIQARLSTM 120 QSMPSVEAQA PPAQSISTSE MASNSIVSMH FDILQEVSTE FTSLCNPLDN KDDDLQALAR 180 DFVSRYLPGV RFRPPTSQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-38 | 12 | 110 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-38 | 12 | 110 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G265400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021630738.1 | 1e-147 | LOB domain-containing protein 19-like | ||||
Swissprot | O81322 | 4e-72 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A2C9WPF0 | 1e-146 | A0A2C9WPF0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_030486m | 1e-141 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 2e-74 | LOB domain-containing protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G265400.1.p |