PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G264700.4.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRF
Protein Properties Length: 463aa    MW: 49643.6 Da    PI: 9.5851
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G264700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.3e-24130174145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRC+++v++g+k+CE H+hrgr+rsrk++e+
  Manes.01G264700.4.p 130 DPEPGRCRRTDGKKWRCKKNVVSGHKYCEQHMHRGRKRSRKPVEA 174
                          79****************************************997 PP
2WRC642.1e-20345381238
                  WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsr 38 
                           epgrCrRtDGKkWRC+r+v++g+k+C  H+hrg ++
  Manes.01G264700.4.p 345 VEPGRCRRTDGKKWRCRRDVVPGEKYCKIHMHRGAKK 381
                          59********************************776 PP
3QLQ35.43.3e-1370104337
                  QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          +T aQl +L +Q+ +yKy+a ++PvP+ L+++ +k
  Manes.01G264700.4.p  70 LTEAQLVELQRQVIIYKYIATGLPVPSTLVLPFWK 104
                          8*******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.9E-568104IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166615.74469104IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.5E-870102IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.455130174IPR014977WRC domain
PfamPF088791.4E-20131173IPR014977WRC domain
PROSITE profilePS5166721.397344388IPR014977WRC domain
PfamPF088794.7E-18346382IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MVMGAIHPQS PASRSGPCKG EDKVRTLATE VKKGDDDQVK EEAASPSMKL CIGIGDDDRG  60
PSIRHGKALL TEAQLVELQR QVIIYKYIAT GLPVPSTLVL PFWKSVDSSS GSVNVEGYSP  120
QEFDYRNMMD PEPGRCRRTD GKKWRCKKNV VSGHKYCEQH MHRGRKRSRK PVEASQMHTA  180
NATSLKNPSK TSQNPSTSNS ISIAATLSNN TGISHKNYGT ACSSANAQII GCTTEAATVV  240
SGQKAISTSW NPRGISGCLN ANAIMITSSV PTDSTITTAT TGGNKGGSKY NHETNSFADR  300
NVNCSDSIGL KNLIYEGNSS RNFKNAKGVT SQGLNFSPKS VLQDVEPGRC RRTDGKKWRC  360
RRDVVPGEKY CKIHMHRGAK KPMEASQSPA LLNATPETST TTATLLKKAD GINLNTTLSI  420
SLSANHQLGT NDTTSDTTIS NNSDTIISNT IIAPCENGDS SS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G264700.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623030.10.0growth-regulating factor 9-like isoform X2
TrEMBLA0A2C9WPD60.0A0A2C9WPD6_MANES; Uncharacterized protein
STRINGcassava4.1_032797m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.16e-45growth-regulating factor 9