PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G264700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | GRF | ||||||||
Protein Properties | Length: 477aa MW: 51205.4 Da PI: 9.5305 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.7 | 2.4e-24 | 130 | 174 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC+++v++g+k+CE H+hrgr+rsrk++e+ Manes.01G264700.2.p 130 DPEPGRCRRTDGKKWRCKKNVVSGHKYCEQHMHRGRKRSRKPVEA 174 79****************************************997 PP | |||||||
2 | WRC | 64 | 2.2e-20 | 359 | 395 | 2 | 38 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsr 38 epgrCrRtDGKkWRC+r+v++g+k+C H+hrg ++ Manes.01G264700.2.p 359 VEPGRCRRTDGKKWRCRRDVVPGEKYCKIHMHRGAKK 395 59********************************776 PP | |||||||
3 | QLQ | 35.3 | 3.4e-13 | 70 | 104 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +T aQl +L +Q+ +yKy+a ++PvP+ L+++ +k Manes.01G264700.2.p 70 LTEAQLVELQRQVIIYKYIATGLPVPSTLVLPFWK 104 8*******************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.9E-5 | 68 | 104 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 15.744 | 69 | 104 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.6E-8 | 70 | 102 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.455 | 130 | 174 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.5E-20 | 131 | 173 | IPR014977 | WRC domain |
PROSITE profile | PS51667 | 21.397 | 358 | 402 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.9E-18 | 360 | 396 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MVMGAIHPQS PASRSGPCKG EDKVRTLATE VKKGDDDQVK EEAASPSMKL CIGIGDDDRG 60 PSIRHGKALL TEAQLVELQR QVIIYKYIAT GLPVPSTLVL PFWKSVDSSS GSVNVEGYSP 120 QEFDYRNMMD PEPGRCRRTD GKKWRCKKNV VSGHKYCEQH MHRGRKRSRK PVEASQMHTA 180 NATSLKNPSK TSQNPSTSNS ISIAATLSNN TGISHKNYGT ACSSANAQII GCTTEAATVV 240 SGQKAISTSW NPRGISGCLN ANAIMITSSV PTDSTITTAT TGGNKGGSKY NHETNSFADR 300 NVNCSDSIGL KNLIYEGNSS RNFKNAKGVT SQGLNFSPKS VLQVQGCGTA YLYRSYVDVE 360 PGRCRRTDGK KWRCRRDVVP GEKYCKIHMH RGAKKPMEAS QSPALLNATP ETSTTTATLL 420 KKADGINLNT TLSISLSANH QLGTNDTTSD TTISNNSDTI ISNTIIAPCE NGDSSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G264700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021623030.1 | 0.0 | growth-regulating factor 9-like isoform X2 | ||||
TrEMBL | A0A2C9WPE4 | 0.0 | A0A2C9WPE4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_032797m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45480.1 | 3e-47 | growth-regulating factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G264700.2.p |