PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G264700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRF
Protein Properties Length: 486aa    MW: 52167.5 Da    PI: 9.4218
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G264700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.4e-24139183145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRC+++v++g+k+CE H+hrgr+rsrk++e+
  Manes.01G264700.1.p 139 DPEPGRCRRTDGKKWRCKKNVVSGHKYCEQHMHRGRKRSRKPVEA 183
                          79****************************************997 PP
2WRC63.92.3e-20368404238
                  WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsr 38 
                           epgrCrRtDGKkWRC+r+v++g+k+C  H+hrg ++
  Manes.01G264700.1.p 368 VEPGRCRRTDGKKWRCRRDVVPGEKYCKIHMHRGAKK 404
                          59********************************776 PP
3QLQ35.33.5e-1370104337
                  QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          +T aQl +L +Q+ +yKy+a ++PvP+ L+++ +k
  Manes.01G264700.1.p  70 LTEAQLVELQRQVIIYKYIATGLPVPSTLVLPFWK 104
                          8*******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.9E-568104IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166615.74469104IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.7E-870102IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.455139183IPR014977WRC domain
PfamPF088791.5E-20140182IPR014977WRC domain
PROSITE profilePS5166721.397367411IPR014977WRC domain
PfamPF088795.0E-18369405IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MVMGAIHPQS PASRSGPCKG EDKVRTLATE VKKGDDDQVK EEAASPSMKL CIGIGDDDRG  60
PSIRHGKALL TEAQLVELQR QVIIYKYIAT GLPVPSTLVL PFWKSVDSSS GSVNGEILGP  120
YPSFEGYSPQ EFDYRNMMDP EPGRCRRTDG KKWRCKKNVV SGHKYCEQHM HRGRKRSRKP  180
VEASQMHTAN ATSLKNPSKT SQNPSTSNSI SIAATLSNNT GISHKNYGTA CSSANAQIIG  240
CTTEAATVVS GQKAISTSWN PRGISGCLNA NAIMITSSVP TDSTITTATT GGNKGGSKYN  300
HETNSFADRN VNCSDSIGLK NLIYEGNSSR NFKNAKGVTS QGLNFSPKSV LQVQGCGTAY  360
LYRSYVDVEP GRCRRTDGKK WRCRRDVVPG EKYCKIHMHR GAKKPMEASQ SPALLNATPE  420
TSTTTATLLK KADGINLNTT LSISLSANHQ LGTNDTTSDT TISNNSDTII SNTIIAPCEN  480
GDSSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G264700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623024.10.0growth-regulating factor 9-like isoform X1
TrEMBLA0A2C9WPF60.0A0A2C9WPF6_MANES; Uncharacterized protein
STRINGcassava4.1_032797m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.12e-47growth-regulating factor 9