PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G263300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family TCP
Protein Properties Length: 367aa    MW: 38916.3 Da    PI: 9.4933
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G263300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.91.5e-37841852104
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaa 91 
                          ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ +++   +  + s+++++
  Manes.01G263300.1.p  84 PPKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAM-SVNGTLKIPTTSNANSE 172
                          789*************************************************************99999555.22222222222222233 PP

                  TCP  92 ksaakskksqksa 104
                          +++++ kk++k++
  Manes.01G263300.1.p 173 PNDPSVKKKRKRP 185
                          3333222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3089172IPR005333Transcription factor, TCP
PROSITE profilePS5136927.14190144IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MATLIHKQEI EHDDDTRNVD LRISADGDAH TDKLDPTANS IFTTKEVAPK EEPDSEERSP  60
APLGVMPIAV HVPTAIRMPL AAAPPKRAST KDRHTKVEGR GRRIRMPATC AARIFQLTRE  120
LGHKSDGETI RWLLEHAEPA IIAATGTGTV PAIAMSVNGT LKIPTTSNAN SEPNDPSVKK  180
KRKRPANSEY IDISDAAVSV SAPLAPLMTP QPPPPQQQTA TAVIPQGLVP MWAIPSNAVV  240
PGAFFMVPPM AASIAGTPNQ PQIFTFPAAA TPLINISARP ISSFVSSMQQ AANIAVAMPV  300
SSSTISGSKP TKATSVMAPS SSSAPISSST ANSTNTSTTT TQMLRDFSLE IYDKQELQFM  360
TRPSKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177184VKKKRKRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G263300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613812.10.0transcription factor TCP9-like
SwissprotO646472e-98TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A2C9WRV60.0A0A2C9WRV6_MANES; Uncharacterized protein
STRINGcassava4.1_032088m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-88TCP family protein