PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G249900.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bZIP | ||||||||
Protein Properties | Length: 423aa MW: 44841 Da PI: 9.3236 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 62.3 | 9e-20 | 277 | 339 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae eeL++kv++L++eN aLk+e+++l ++++kl+ e+ Manes.01G249900.4.p 277 ERELKRERRKQSNRESARRSRLRKQAESEELARKVESLTSENLALKSEMNQLIEKSEKLRLEN 339 89*********************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.3E-35 | 1 | 94 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 3.3E-20 | 127 | 256 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 9.5E-16 | 270 | 336 | No hit | No description |
SMART | SM00338 | 5.6E-17 | 277 | 341 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.5E-18 | 277 | 339 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.116 | 279 | 342 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.13E-10 | 280 | 335 | No hit | No description |
CDD | cd14702 | 2.55E-18 | 282 | 331 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 284 | 299 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MGNNEDGKSS KPEKSSSPVP VDQTNFHVYP DWAAMQAYYG PRVALPPYYN SAIASGHAPH 60 PYMWGPPQPI MPPYGAPYAA VYSHGGVYAH PAVPIGSHPH VPGVPSAPAA ATPVSVETPT 120 KSTGNTDQGL MKKLKRFDGL AMSIGNASSN TESAEGGDHR LSQSVETEGS SDGSDGNTAG 180 GRKRSCEGKP TIVGEMRTET QARSVPTGKV GGSPDKVLVA AAASASASGK SLGAVVSSGM 240 STALELRNPP MDAAKANAAN IPQPCQVLPS EAWIQNEREL KRERRKQSNR ESARRSRLRK 300 QAESEELARK VESLTSENLA LKSEMNQLIE KSEKLRLENA ALLEKLKNSQ LGRKQEVILN 360 GSEKQSASAV STENLLSRVS NSTSVDRSKG EDEELYERSS NPRAKLHQLL GASPRTDAVA 420 AG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 293 | 299 | RRSRLRK |
2 | 293 | 300 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G249900.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB164426 | 9e-35 | AB164426.1 Psophocarpus tetragonolobus WBR2 mRNA for bZip transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021612198.1 | 0.0 | common plant regulatory factor 1 isoform X2 | ||||
Swissprot | Q99089 | 1e-151 | CPRF1_PETCR; Common plant regulatory factor 1 | ||||
TrEMBL | A0A251LV96 | 0.0 | A0A251LV96_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_008339m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 1e-113 | G-box binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G249900.4.p |
Publications ? help Back to Top | |||
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