PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G245000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ARF | ||||||||
Protein Properties | Length: 705aa MW: 77848.7 Da PI: 6.2482 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.3 | 6.2e-23 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++ +k+a+++ +++ + +++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF Manes.01G245000.1.p 128 FCKILTASDTSTHGGFSVLRKHATDClppldMNQATPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL-- 215 99****************************9555556679************************************************.. PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 + +++el+v+v+r Manes.01G245000.1.p 216 RGDNGELRVGVRR 228 3489999****98 PP | |||||||
2 | Auxin_resp | 99.7 | 4.1e-33 | 254 | 333 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++a+++ +svGmR+km+fe+eds+er+++Gt+vgv d++ +W++SkWrsLk Manes.01G245000.1.p 254 ASHAVTTQTLFVVYYKPRT--SQFIIGLNKYLEAVNHGFSVGMRYKMRFEGEDSPERSFTGTIVGVGDVSA-QWSGSKWRSLK 333 689***************6..9**********************************************777.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.05E-41 | 117 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-39 | 122 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.72E-20 | 126 | 228 | No hit | No description |
Pfam | PF02362 | 5.2E-21 | 128 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.026 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-21 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.9E-31 | 254 | 333 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 8.0E-13 | 557 | 677 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 4.9E-12 | 586 | 665 | No hit | No description |
PROSITE profile | PS51745 | 25.774 | 589 | 681 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MAHVETNFGS DSLSRDERGG DDLYTELWKA CAGPLVDVPV PGERVFYFPQ GHMEQLEAST 60 NQELTQQIPR FNLPSKILCR VVNIQLLAEQ ETDEVYAQIT LHPEPNQEEP TSPDSRLPEP 120 KKPTVHSFCK ILTASDTSTH GGFSVLRKHA TDCLPPLDMN QATPTQELAA KDLHGYEWRF 180 KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD AFVFLRGDNG ELRVGVRRLA RQQSLMPSSV 240 ISRQSMHLGV LATASHAVTT QTLFVVYYKP RTSQFIIGLN KYLEAVNHGF SVGMRYKMRF 300 EGEDSPERSF TGTIVGVGDV SAQWSGSKWR SLKIQWDEPA TIQRPERVSP WDIEPFAASA 360 SINLPPTVLK SKRPRPLDTP VSEITTNSTT SPFWYRGSAQ SHDLSQLGSA AEAQSCEKSQ 420 VVWSVRQKEI DSSVVNGSIF CNSRVRTEGI WPPSPHMNVS LSLFFDSADN SRTITQSVAS 480 GYVSPVPLRQ TDVLMHDQVE KGKKYENSIG CRLFGIDLTS NSNAAPPLEE ALCTTVDPNG 540 TGGPLAAPGD SDKAQNMDAS KSSEEQKQIA SDALPKETHG KLGPTSSTRS RTKVQMQGVA 600 VGRAVDLTVL KGYGDLIKAL EEMFEIKGEL STPDKWAVVF TDDEGDMMLV GDDPWPEFCK 660 MVKKILIYSS EEVKKMSTRS KLHASSLEDE GTIASLDSEH KSET* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-176 | 21 | 356 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-176 | 21 | 356 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-176 | 21 | 356 | 17 | 355 | Auxin response factor 1 |
4ldx_A | 1e-176 | 21 | 356 | 17 | 355 | Auxin response factor 1 |
4ldx_B | 1e-176 | 21 | 356 | 17 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 371 | 375 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G245000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021611599.1 | 0.0 | auxin response factor 9-like | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A2C9WNV1 | 0.0 | A0A2C9WNV1_MANES; Auxin response factor | ||||
STRING | cassava4.1_002408m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1511 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G245000.1.p |