PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G238800.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 410aa MW: 46769.9 Da PI: 6.5164 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 100.3 | 1.2e-31 | 115 | 219 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 f+kv tpsdv+k++rlv+pk++ae++ + ++e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ Manes.01G238800.4.p 115 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldSTSSEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKQLDAGDIVSFQRGv 204 89***************************9666678899************************************************665 PP SS.SEE..EEEEE-S CS B3 86 gr.sefelvvkvfrk 99 g+ + +l++ ++r+ Manes.01G238800.4.p 205 GEsGKHRLYIDWRRR 219 777888899999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.7E-42 | 107 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-29 | 112 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.37E-27 | 113 | 214 | No hit | No description |
Pfam | PF02362 | 3.6E-29 | 115 | 219 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.115 | 115 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.9E-23 | 115 | 220 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MNFVELQRGY CDKEQEGEEE EEEEEEEEIM TSKLPFSSPS SSSSSSTKYR NFLPQHQNLW 60 LGPSDSQQEY KTHESSSSLN FDNRQELMAL SLGNDNGTVN TGGGTNEPIE REHMFDKVVT 120 PSDVGKLNRL VIPKQYAEKY FPLDSTSSEK GLLLNFEDRN GKPWRFRYSY WNSSQSYVMT 180 KGWSRFVKEK QLDAGDIVSF QRGVGESGKH RLYIDWRRRP NAPDPTSFAD LELQNQLHFP 240 QSVRWDRLYS LPQPLSSFPR PYEQPQFQHL SYRIHHHRHQ PYNQYHYHQQ AQYYLRPEGA 300 LPIGAMHQRG NQAPVVIDSV PVVPGRGVGK RLRLFGVNME CPTQEDQSYS SVTIPAHGST 360 ATMGSFSPLL ASSSLQPPQS KVPGSSMTTM QEPEFSKKGK TSLSFDLDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-64 | 110 | 222 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-64 | 110 | 222 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G238800.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021611066.1 | 0.0 | B3 domain-containing transcription factor NGA1-like | ||||
Swissprot | O82799 | 3e-81 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | A0A251LUR3 | 0.0 | A0A251LUR3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_008697m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 1e-67 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G238800.4.p |