PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G238800.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 410aa    MW: 46769.9 Da    PI: 6.5164
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G238800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.31.2e-31115219199
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++    + ++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  
  Manes.01G238800.3.p 115 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldSTSSEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKQLDAGDIVSFQRGv 204
                          89***************************9666678899************************************************665 PP

                          SS.SEE..EEEEE-S CS
                   B3  86 gr.sefelvvkvfrk 99 
                          g+  + +l++ ++r+
  Manes.01G238800.3.p 205 GEsGKHRLYIDWRRR 219
                          777888899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.7E-42107226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-29112219IPR015300DNA-binding pseudobarrel domain
CDDcd100173.37E-27113214No hitNo description
PfamPF023623.6E-29115219IPR003340B3 DNA binding domain
PROSITE profilePS5086315.115115220IPR003340B3 DNA binding domain
SMARTSM010193.9E-23115220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MNFVELQRGY CDKEQEGEEE EEEEEEEEIM TSKLPFSSPS SSSSSSTKYR NFLPQHQNLW  60
LGPSDSQQEY KTHESSSSLN FDNRQELMAL SLGNDNGTVN TGGGTNEPIE REHMFDKVVT  120
PSDVGKLNRL VIPKQYAEKY FPLDSTSSEK GLLLNFEDRN GKPWRFRYSY WNSSQSYVMT  180
KGWSRFVKEK QLDAGDIVSF QRGVGESGKH RLYIDWRRRP NAPDPTSFAD LELQNQLHFP  240
QSVRWDRLYS LPQPLSSFPR PYEQPQFQHL SYRIHHHRHQ PYNQYHYHQQ AQYYLRPEGA  300
LPIGAMHQRG NQAPVVIDSV PVVPGRGVGK RLRLFGVNME CPTQEDQSYS SVTIPAHGST  360
ATMGSFSPLL ASSSLQPPQS KVPGSSMTTM QEPEFSKKGK TSLSFDLDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-641102223116B3 domain-containing transcription factor NGA1
5os9_B3e-641102223116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G238800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611066.10.0B3 domain-containing transcription factor NGA1-like
SwissprotO827993e-81NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A251LUR30.0A0A251LUR3_MANES; Uncharacterized protein
STRINGcassava4.1_008697m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-67B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]