PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G231300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 269aa    MW: 31546.3 Da    PI: 6.6787
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G231300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-182370148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +l+++v+ +G g+W+t ar+ g++Rt+k+c++rw++yl
  Manes.01G231300.1.p 23 KGPWTAEEDVILAEYVAIHGEGRWNTAARCAGLKRTGKSCRLRWLNYL 70
                         79********************************************97 PP
2Myb_DNA-binding47.63.8e-1576119146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T +E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
  Manes.01G231300.1.p  76 RGNITLQEQLLILELHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 119
                          7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.4551874IPR017930Myb domain
SuperFamilySSF466891.05E-3020117IPR009057Homeodomain-like
SMARTSM007171.2E-142272IPR001005SANT/Myb domain
PfamPF002493.2E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-222477IPR009057Homeodomain-like
CDDcd001674.60E-102570No hitNo description
PROSITE profilePS5129418.42775125IPR017930Myb domain
SMARTSM007173.1E-1375123IPR001005SANT/Myb domain
PfamPF002496.1E-1476119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-2278124IPR009057Homeodomain-like
CDDcd001677.40E-696119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDTQVRNHDC ATYQNEENID IKKGPWTAEE DVILAEYVAI HGEGRWNTAA RCAGLKRTGK  60
SCRLRWLNYL RPDIRRGNIT LQEQLLILEL HSRWGNRWSK IAQQLPGRTD NEIKNYWRTR  120
VQKQAKQLKC DVNSKQFRDS MRHIWIPRLI ERIQAASRSP TDQSTTYSSY KDNHNDIPPS  180
SEAVQMNDPM IEWMMPEPSR TSSESLETQV SLVSSVTKYQ NQPNKQNLYG LYSEEESNRW  240
VEMETLAEES LDSLWNQENI WFLQQQLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241312517128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G231300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021610335.10.0transcription factor MYB108-like
SwissprotQ10MB41e-80MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A2C9WR000.0A0A2C9WR00_MANES; Uncharacterized protein
STRINGcassava4.1_023136m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.17e-78myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]