PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G199300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 196aa MW: 21698.8 Da PI: 8.4936 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.3 | 5.7e-05 | 23 | 45 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Manes.01G199300.1.p 23 YTCSFCKRQFNSAQALGGHMNVH 45 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.02E-7 | 20 | 50 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-4 | 20 | 48 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.261 | 23 | 50 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0031 | 23 | 45 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 9.5E-7 | 23 | 46 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 25 | 45 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MERTCLGSEG DNSSGFLWPQ RNYTCSFCKR QFNSAQALGG HMNVHRRDRA MLIHLPSWVF 60 DECPNPKPNL SSSSSLPSPR STSTKLASSC PCTHHPLLSP TATSFSSSPS YQEKASTALE 120 CPQRYCSTPL SEALTKKKKK RSIRAVVEVE EIKKGFAQKC ELEVLKKSEV ISLELEIGCK 180 DPKEVLDLEL RLGCF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 4e-11 | 18 | 45 | 2 | 29 | superman protein |
2l1o_A | 4e-11 | 18 | 45 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G199300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021615849.1 | 1e-142 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A2C9WPS1 | 1e-140 | A0A2C9WPS1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_030158m | 1e-141 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2843 | 31 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42410.1 | 1e-24 | zinc finger protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G199300.1.p |