PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G196000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 251aa MW: 28468.1 Da PI: 8.1553 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H Manes.01G196000.1.p 84 FECQYCFKEFANSQALGGHQNAH 106 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-5 | 80 | 110 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.68E-6 | 80 | 111 | No hit | No description |
PROSITE profile | PS50157 | 11.406 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDKESSTILS STLDGENCHS FESCVEKKLK LFGFELNPCR NDESCLKVSA EGDESVNSSN 60 VVSSERDKPV KEKSLTADPD DKKFECQYCF KEFANSQALG GHQNAHKKER MKKKRLQLQA 120 RKASISCYLQ PFQKNLSYNC HGSKWFYDPS CYTPEFNLCE ESQISFIPYD QDSHINASQV 180 PNWYAIPAQV PFQQETCMFT LTRPDRSREH RPVIKKRSPL PASKQTCKSL DLQLGLGLQS 240 NIRSSTRTGI * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G196000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021605156.1 | 0.0 | uncharacterized protein LOC110609691 | ||||
TrEMBL | A0A2C9WME1 | 0.0 | A0A2C9WME1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_014634m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9594 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06650.1 | 8e-16 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G196000.1.p |