PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G189600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 396aa    MW: 44579.8 Da    PI: 9.1286
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G189600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2378.7e-1273129155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV++++++gr++A+++d  s+n  +r k  + g ++ +e Aa+a++ a++k++g
  Manes.01G189600.1.p  73 SRFRGVSRHRWTGRFEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAALKYWG 129
                          789******************88887786625555.********************98 PP
2AP252.41.4e-16172223155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Manes.01G189600.1.p 172 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 223
                          89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-873129IPR001471AP2/ERF domain
CDDcd000182.43E-1773139No hitNo description
SuperFamilySSF541718.5E-1473139IPR016177DNA-binding domain
SMARTSM003801.6E-1774143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-1274138IPR001471AP2/ERF domain
PROSITE profilePS5103218.04474137IPR001471AP2/ERF domain
PRINTSPR003672.8E-57586IPR001471AP2/ERF domain
PfamPF008474.9E-12172223IPR001471AP2/ERF domain
CDDcd000185.06E-25172233No hitNo description
SuperFamilySSF541716.28E-18172233IPR016177DNA-binding domain
SMARTSM003802.7E-26173237IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-18173232IPR001471AP2/ERF domain
PROSITE profilePS5103218.953173231IPR001471AP2/ERF domain
PRINTSPR003672.8E-5213233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MASGNSQVTV SRSFCMIEEG DAMENKCIKR RRRDPSVVNS TLSSNVNEHE QAHRKQGDQT  60
VAAASATTVK RSSRFRGVSR HRWTGRFEAH LWDKGSWNPT QRKKGKQGAY DEEESAARAY  120
DLAALKYWGT STFTNFPASD YEKEIEIMKN VTKEEYLANL RRRSSGFSRG VSKYRGVARH  180
HHNGRWEARI GRVFGNKYLY LGTYSTQEEA ARAYDIAAIE YRGINAVTNF DLSTYIRWLR  240
PGADPSPPPA RESKSTADIL QPITTFSNHI SPIDKTTPQQ LPILHSDNPY IVEDLNRPLK  300
QDIFQTNPPI SPCTKTSSSP TALSLLLKSS MFKELVEKNL NADENDDAEV KVVPEIGNNE  360
VREIFYNGIS HIPFPYLCPS DGDALPLYNR TGHSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198106PTQRKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G189600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612878.10.0AP2-like ethylene-responsive transcription factor At1g79700, partial
TrEMBLA0A2C9WPR50.0A0A2C9WPR5_MANES; Uncharacterized protein
STRINGcassava4.1_029670m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-80AP2 family protein