PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.01G178200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 837aa MW: 90876.8 Da PI: 7.2988 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.8 | 6.8e-07 | 431 | 451 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +lCr++ r G C+ G++CkF+H Manes.01G178200.1.p 431 ALCRHYIR-GRCQEGEKCKFSH 451 89******.************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.582 | 427 | 454 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 427 | 452 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 428 | 453 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-4 | 432 | 452 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.21 | 456 | 482 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.211 | 456 | 480 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.272 | 481 | 509 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.11 | 484 | 508 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 485 | 513 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 837 aa Download sequence Send to blast |
MDPNNSATQT TVSCNENFDP AGFQEGFCDT KAVIDEIENM MRVEEDDNPS KQRDLPVAVI 60 DDTDETGLQG KGFGQLQQWI MDELEDVIKG NKEVSFDNVC NFATASLNES QNGGVMGTFS 120 NNVERHLDFQ PDVLEAFGNV DQQQVDKAQS SQNTFNTIDS SLDKSITCGV PKLSDNHEEN 180 SSSLRNNQLE ASHVMQQKEM ESGKSVYTIN AVCSSDHMIE DGEMEEGEIS GEIQVCGSLV 240 DVSSEEVVPQ EQKQLSEDVA DGNKFPSNDK KEANKKDSGS SSVTLEMVEN MSDTRGAETK 300 YIRNEMAYKR KFIYRDAILV EAPDGYKKQK KGCGTKELKK GSGVKGANKG KDSASCARNA 360 DQIATGRQEN TCKDELHQDA GLENKKKRGP PSEEKKAKKK EKRRKKRAQK NRELGVRRLK 420 LRPVHNPKPV ALCRHYIRGR CQEGEKCKFS HETIPLTKSK PCCHFARHSC LKGDDCPFDH 480 QLSKYPCANY VSAGFCSRGE DCMFSHELPL KEDLPSVSNV PTPDLKPQSL PGTSNSKKQP 540 DTLGVNSCKN TEHNVAKSVM SPPSVVPKGI SFLCAGKSSV FESSHSARGI PSLMRNEGFK 600 VGNKTDGRTL GSIQNSNESP RGTPAAVPPM GINFLAFGKA PWEFSNIKKL NGNSGAKLSL 660 PVNLDLTKQS ASPLHTGNDI QVGKESKQSV SNTTAGLNKM LPESEFAAVP LKSNILLSGE 720 FSTDGSTSSS QGSLPSNSVT CADRSVLASA IAPEKSSAIL QGLLASAHQS ADYPWLKKTP 780 KSAQKAFLST LAFAAKVESE MKMKQSPIGA RAVSGRIIKE TGNIVIPDSH NDSTKA* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 385 | 406 | KKRGPPSEEKKAKKKEKRRKKR |
2 | 398 | 406 | KKEKRRKKR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.01G178200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021631639.1 | 0.0 | zinc finger CCCH domain-containing protein 65 isoform X2 | ||||
TrEMBL | A0A2C9WLV2 | 0.0 | A0A2C9WLV2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_001384m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6650 | 23 | 23 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.01G178200.1.p |