PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G176600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YC
Protein Properties Length: 282aa    MW: 31292.8 Da    PI: 4.613
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G176600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC54.72.3e-176861898
                NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                         ++++P arikki+++ded+ +i+  +P l+ska elf+ +l  +++  + +   +tl+   ++++v   ++fdfl +iv +
  Manes.01G176600.1.p  6 DTRFPAARIKKIMQSDEDIGKIAMAVPLLVSKALELFLQDLCDQTYAITLQRGAKTLNSLHLKQCVHTFNVFDFLREIVGK 86
                         5789************************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-25372IPR009072Histone-fold
PfamPF008085.5E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.71E-181888IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQS DEDIGKIAMA VPLLVSKALE LFLQDLCDQT YAITLQRGAK  60
TLNSLHLKQC VHTFNVFDFL REIVGKVPDL GDSDAVGDDH GLAKRRKVAD DEEDNDSNEE  120
FNRSRMHDTA QASGSGRGRG RGRGRGRGRG SKAGERDAVT KCEKFEDVDN SHQDVNCSPI  180
IEKLYTVDEP EALKENILDG KSAQASVHDF DLNVDLDENG ESKTFLVAAP PSSTVKPTPE  240
MKFELPGWSL ADVEKMDIDP IQLAISNRRI DEDEEDYDEE G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-22271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138148RGRGRGRGRGR
2140149RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G176600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607456.10.0dr1-associated corepressor homolog
RefseqXP_021607465.10.0dr1-associated corepressor homolog
TrEMBLA0A2C9WN070.0A0A2C9WN07_MANES; Uncharacterized protein
STRINGcassava4.1_013455m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.14e-57nuclear factor Y, subunit C11