PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G172000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 761aa    MW: 84995.9 Da    PI: 5.4174
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G172000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.81.2e-1113877571373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL+ cA+avs++d + a +lL+++++++sp gd  qRla++f+++L+arla++++++y al+++++s    ++ l+a++++  ++P+
  Manes.01G172000.1.p 387 LRTLLVLCAQAVSADDRRTAYELLKQIRQHSSPFGDGSQRLAHCFANGLEARLAGTGTQIYTALSSEKAS---AADMLKAYQAYLSACPF 473
                          5789************************************************************999998...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           k++ + aN+ Il a ++++++HiiDf++ +G+QWpaL+  L++R++gpp+lRiTg++ p+sg   +e+++etg+rLak++e+ +vpfe+
  Manes.01G172000.1.p 474 KKIAIIFANHSILAASKKATTLHIIDFGVLYGFQWPALIYRLSKRAGGPPKLRITGIELPQSGfrPAERVQETGRRLAKYCERHNVPFEY 563
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          n+ +ak++e++++e+L+++ gE +aVn+ ++  +llde+v ++s+r++vL+l+ +++P++++++  + +++++ F++rf eal ++salf
  Manes.01G172000.1.p 564 NA-IAKKWETIQIEDLKINGGEFVAVNCLFRFRNLLDETVVVNSPRNSVLNLISKTKPDIFIHAIVNGSYSAPFFVTRFREALFHFSALF 652
                          **.7************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d+++++++re++ r k E+e+ gre+ nv+aceg+er+er et+++W+ r ++aG+k++pl+ +  ++ k+ +++ + + + v+++ +++
  Manes.01G172000.1.p 653 DMFDTNMSREDQMRLKFEKEFYGREALNVIACEGSERVERPETYKQWQIRNMRAGLKQLPLDPQLLNKLKCRVKTRYHEDFVVDHDGQWM 742
                          *****************************************************************************999********** PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          ++gWk+r +++ SaW
  Manes.01G172000.1.p 743 LQGWKGRIIYASSAW 757
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.679361738IPR005202Transcription factor GRAS
PfamPF035144.3E-109387757IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MGTDSGFSGI SGFKFEDDIL FPDSDQYSNP INGFKFKHTL DFNSVDSSLV LPDLDPSKAS  60
LSSIMTTDAD SPSDDNDFSE TVLKYISQML MEEDMEEKPC MFHDPLALQA AEKSLYDVLG  120
EKNLPSPNQS YFYGDQFLVD SPDGVFSGSY DYSSNSSSSS NIGGSVEQWS GELGEFKPSF  180
MQTPLPTNFI FQSVANSSSQ EPIKSENGLA RNDFGEMGSS IGKIMVQNLF SDGELALQFQ  240
KGVEEANKFL PKGNQLLIDL ETVSMPALKE KDMKVAVKVE KEEREYLPNL TKGKKNHDRE  300
DEDLQEERSN KQSAVYADES ELAEMFDKVL VCTGEECGPP TCILNDSLQS GSSKTLPQNG  360
QTNGSTPGGG GKNRAKRQGN KKEVVDLRTL LVLCAQAVSA DDRRTAYELL KQIRQHSSPF  420
GDGSQRLAHC FANGLEARLA GTGTQIYTAL SSEKASAADM LKAYQAYLSA CPFKKIAIIF  480
ANHSILAASK KATTLHIIDF GVLYGFQWPA LIYRLSKRAG GPPKLRITGI ELPQSGFRPA  540
ERVQETGRRL AKYCERHNVP FEYNAIAKKW ETIQIEDLKI NGGEFVAVNC LFRFRNLLDE  600
TVVVNSPRNS VLNLISKTKP DIFIHAIVNG SYSAPFFVTR FREALFHFSA LFDMFDTNMS  660
REDQMRLKFE KEFYGREALN VIACEGSERV ERPETYKQWQ IRNMRAGLKQ LPLDPQLLNK  720
LKCRVKTRYH EDFVVDHDGQ WMLQGWKGRI IYASSAWVPA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-483707591379Protein SCARECROW
5b3h_D8e-483707591379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G172000.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623034.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2C9WLQ00.0A0A2C9WLQ0_MANES; Uncharacterized protein
STRINGcassava4.1_002197m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]