PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G171900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 783aa    MW: 87654.5 Da    PI: 4.9968
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G171900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.86.8e-1164057791373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL+ cA+a s++d++ a++lL++++e++sp gd  qRla+yf+++L+arla+s++++ +  ++ ++++++ ++ l+a+k+  +++P+
  Manes.01G171900.1.p 405 LRSLLILCAQAASANDFRTANELLKQVREHSSPLGDGSQRLAHYFANGLEARLAGSGTGMQDFYTSIASRRMTAADMLKAYKTQLHACPF 494
                          6899************************************************************************************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           k+s l aN++Il a+e+++++Hi+Df++ +G+QWp L+q L+ Rp+gpp+lRiTg++ p++g   +e++eetg+rLak++++++vpf++
  Manes.01G171900.1.p 495 KKLSILFANKMILHAAENATTLHIVDFGVLYGFQWPILIQLLSMRPGGPPKLRITGIELPQQGfrPAERIEETGRRLAKYCQRFNVPFDY 584
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          n+++a+++e++ +e+L+++++E+laVn+  + ++llde+v+++ +r++vL+l+++++P+++v++  + ++n++ F++rf eal ++s+lf
  Manes.01G171900.1.p 585 NPIAAQEWEKIPIEDLKIDSNEVLAVNCLCRFKNLLDETVEVNCPRNAVLNLIRKIKPNIFVHAIINGSYNAPFFVTRFREALFHFSSLF 674
                          ****************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d++++++pre++er k Ere+ gre++nvvaceg er+er et+++W+ r ++aGFk++pl+++++++ +  ++  + + + ++++s+++
  Manes.01G171900.1.p 675 DMFDSTIPREDQERLKFEREFCGREAMNVVACEGMERVERPETYKQWQFRTTRAGFKQLPLDQEVMEKCRDKMKAWYHKDFVIDQDSNWM 764
                          *****************************************************************************888********** PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          ++gWk+r +++ S+W
  Manes.01G171900.1.p 765 LQGWKGRIIYASSCW 779
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.447379760IPR005202Transcription factor GRAS
PfamPF035142.4E-113405779IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MDPKYTVIGE QSIFPNSDRH PDDESGFNFD SPSSDLNFVN VLSDSSDFVA NDLGLSFAFS  60
PGGESFIPEF SPGGESFEPS PGSSPEGDAS SPSTDTDSSD PVLKYISQML MEENMEDKPH  120
MFYDPFALKA TEKSLYDVLG EEYPSINSPQ LHINLESPDS NLLGSGSDFG GITSSSPSTG  180
TATSDFVDPQ LVGYVGESNS VLLQTYIPYD YHLQSNSHSS SQFSVNSSNG LPDIGHGLMS  240
SSVSEMLQNM FSETESVLQF KRGLEEASKF LPKASQLVVD LESNAFATGQ KEEAPVVIVK  300
EEKIERGSSP NGSRGRKNHE REDSDLEQGR SSKQSAVYVE ESELSEMFDK VLLWPMLKGK  360
QWCCGPEVKQ DEASQIPKQN EKSNGSNGGK SRAKKQSRKK ETVDLRSLLI LCAQAASAND  420
FRTANELLKQ VREHSSPLGD GSQRLAHYFA NGLEARLAGS GTGMQDFYTS IASRRMTAAD  480
MLKAYKTQLH ACPFKKLSIL FANKMILHAA ENATTLHIVD FGVLYGFQWP ILIQLLSMRP  540
GGPPKLRITG IELPQQGFRP AERIEETGRR LAKYCQRFNV PFDYNPIAAQ EWEKIPIEDL  600
KIDSNEVLAV NCLCRFKNLL DETVEVNCPR NAVLNLIRKI KPNIFVHAII NGSYNAPFFV  660
TRFREALFHF SSLFDMFDST IPREDQERLK FEREFCGREA MNVVACEGME RVERPETYKQ  720
WQFRTTRAGF KQLPLDQEVM EKCRDKMKAW YHKDFVIDQD SNWMLQGWKG RIIYASSCWV  780
PT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-483887811379Protein SCARECROW
5b3h_D8e-483887811379Protein SCARECROW
5hyz_A8e-484097798374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G171900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622937.10.0scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2C9WLN70.0A0A2C9WLN7_MANES; Uncharacterized protein
STRINGcassava4.1_002125m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]