PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G171800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 574aa    MW: 65152.6 Da    PI: 6.7557
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G171800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.32.9e-1002025713374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lLl+cAeav+ +d++ a++lL +++++++p gd  qRla++f++AL+ar+++   ++++a+++s+ +    +  l a kl++ ++P+l+
  Manes.01G171800.1.p 202 TLLLHCAEAVAVNDHKTASKLLMQIRKHSTPCGDGSQRLAHCFANALEARIVG---RTSEAFAASKLP---ATCMLDAWKLLFSACPFLN 285
                          79***************************************************...888888888888...7889999************ PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                           s++ a ++I+e +e+++r+Hii f++ +G+ W +L+q L++Rp+gpp lR+T ++ pe++  s+++leetg+ La+f+e+l+vpfe+++
  Manes.01G171800.1.p 286 TSNFFAFHTIMEVAEKADRLHIIHFGVVYGFPWSSLIQHLSTRPGGPPVLRVTRIEIPEPVfdSATKLEETGSYLASFCERLNVPFEYTA 375
                          ***********************************************************9999*************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                           ++k++e++++e+ +++++E+++V + ++  +llde+ + ++   +r+++L+++++++P v+++   +  +n++ F +rf eal y+s+l
  Manes.01G171800.1.p 376 -ISKKWESIRFEDYKIHRDEKTIVTCLYRSRNLLDETIDETDincQRNDILNMIRRMNPSVFIHGIVNGGYNAPFFTTRFREALFYFSSL 464
                          .7**********************************9988877889******************************************** PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                          fd+lea+++++  er+++E+e+ g++i nv+aceg+er er et+++W+ r  +aG++++pl++++++++k  ++ ++ + + + e+ ++
  Manes.01G171800.1.p 465 FDMLEANVSHNVPERMVLEQEIYGKRILNVIACEGSERLERPETYKQWHVRNLRAGLRQLPLKQEMMQNMKEQVKLHYHKDFLMYEDGHW 554
                          ******************************************************************************888********* PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          +v+gWk+r L+++S+W+
  Manes.01G171800.1.p 555 IVQGWKGRILFALSCWK 571
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.614174551IPR005202Transcription factor GRAS
PfamPF035141.0E-97202571IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MNTVVQDPSA DAILKCINHT LMEEELEEQN CCILQHYALD LQAAEKSFHD ILGQKCLPFT  60
DLENPVSACM FAADSSLMIR DVHEHESSCV TATPLPLGLE SNASPFFPPP GIVSETENLQ  120
SISGCKVETG KEVILDFANN RVTPVAAAKT TKGKRGTDDH EYDFFNTNPS VSWILHPNGQ  180
SRGHNGEMTR RVKTRKLVDL CTLLLHCAEA VAVNDHKTAS KLLMQIRKHS TPCGDGSQRL  240
AHCFANALEA RIVGRTSEAF AASKLPATCM LDAWKLLFSA CPFLNTSNFF AFHTIMEVAE  300
KADRLHIIHF GVVYGFPWSS LIQHLSTRPG GPPVLRVTRI EIPEPVFDSA TKLEETGSYL  360
ASFCERLNVP FEYTAISKKW ESIRFEDYKI HRDEKTIVTC LYRSRNLLDE TIDETDINCQ  420
RNDILNMIRR MNPSVFIHGI VNGGYNAPFF TTRFREALFY FSSLFDMLEA NVSHNVPERM  480
VLEQEIYGKR ILNVIACEGS ERLERPETYK QWHVRNLRAG LRQLPLKQEM MQNMKEQVKL  540
HYHKDFLMYE DGHWIVQGWK GRILFALSCW KSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-4320657025378Protein SCARECROW
5b3h_A6e-431835701377Protein SCARECROW
5b3h_D6e-431835701377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G171800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634340.10.0scarecrow-like protein 9
SwissprotQ9XE581e-136SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2C9WLI90.0A0A2C9WLI9_MANES; Uncharacterized protein
STRINGcassava4.1_025882m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-138SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]