PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G163300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 488aa    MW: 54340.2 Da    PI: 5.5132
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G163300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-17140186148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
  Manes.01G163300.1.p 140 KGQWTEEEDRKLIKLVKQFGVRKWAQIAEKLA-GRAGKQCRERWHNHL 186
                          799*****************************.*************97 PP
2Myb_DNA-binding57.33.5e-18192234145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +W++eE+++lv+a+ + G++ W+ Ia+ ++ gRt++++k++w+
  Manes.01G163300.1.p 192 KESWSEEEEKILVEAHSKIGNR-WAEIAKLIP-GRTENSIKNHWN 234
                          578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.556135190IPR017930Myb domain
SuperFamilySSF466891.55E-30138233IPR009057Homeodomain-like
SMARTSM007172.2E-17139188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-28141193IPR009057Homeodomain-like
PfamPF139216.2E-20143201No hitNo description
CDDcd001671.86E-16143186No hitNo description
PROSITE profilePS5129420.659191241IPR017930Myb domain
SMARTSM007177.8E-17191239IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-21194239IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MERGGGGGGG GGGFGLGNLP NNPSIYQPTP PLTALDRFLW GRSHFSPQQS QSNVKTNETP  60
VSTNGLYDFT PSTGAIAGVP LPRFQEINFV DALFFDGDNL NCIYERNLNA GLDEEVKVSA  120
RISKGQAKKS KTGSCVTLIK GQWTEEEDRK LIKLVKQFGV RKWAQIAEKL AGRAGKQCRE  180
RWHNHLRPDI KKESWSEEEE KILVEAHSKI GNRWAEIAKL IPGRTENSIK NHWNATKRRQ  240
NSRRKNKQTE NHIEKPQSSI LQDYIRSKDL KNTSVTNGTT NVTTPSHSSI TTTNTPSSST  300
TSDDPSSQFN YFLSELSEPT LDDSPPLITE TYNDELLFLQ DFFTNSSMKP LLENVSTNTS  360
METETSHNVD LHPKNASVLD SFGLYQDNGD QQLIETSDQC SFFTSTLTSP KTCSESLQAE  420
ERPSGHLYSD LYLSYLLDGG SSCSSSIDYG YDNIMNMELV MDQNFTNGKK DMDLIEMVSS  480
SQFFQGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-481382402104C-Myb DNA-Binding Domain
1msf_C2e-481382402104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G163300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605813.10.0transcription factor MYB64-like
TrEMBLA0A2C9WML80.0A0A2C9WML8_MANES; Uncharacterized protein
STRINGcassava4.1_033771m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-52myb domain protein 119